Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.27■■□□□ 1
HLA-DOAP06340 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
HLA-DOAP06340 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
HLA-DOAP06340 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
HLA-DOAP06340 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
HLA-DOAP06340 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
HLA-DOAP06340 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
HLA-DOAP06340 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.26■□□□□ 0.99
HLA-DOAP06340 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
HLA-DOAP06340 FUOM-202ENST00000368551 628 ntTSL 3 BASIC21.26■□□□□ 0.99
HLA-DOAP06340 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.26■□□□□ 0.99
HLA-DOAP06340 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.26■□□□□ 0.99
HLA-DOAP06340 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC21.26■□□□□ 0.99
HLA-DOAP06340 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.26■□□□□ 0.99
HLA-DOAP06340 AP001005.1-201ENST00000571755 1248 ntBASIC21.26■□□□□ 0.99
HLA-DOAP06340 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 MTDHP3-201ENST00000594186 672 ntBASIC21.26■□□□□ 0.99
HLA-DOAP06340 AP001269.4-201ENST00000609611 512 ntBASIC21.26■□□□□ 0.99
HLA-DOAP06340 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.26■□□□□ 0.99
HLA-DOAP06340 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.26■□□□□ 0.99
HLA-DOAP06340 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DOAP06340 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.26■□□□□ 0.99
HLA-DOAP06340 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.25■□□□□ 0.99
HLA-DOAP06340 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.25■□□□□ 0.99
HLA-DOAP06340 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC21.25■□□□□ 0.99
HLA-DOAP06340 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.25■□□□□ 0.99
HLA-DOAP06340 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.25■□□□□ 0.99
HLA-DOAP06340 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.25■□□□□ 0.99
HLA-DOAP06340 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DOAP06340 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
HLA-DOAP06340 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DOAP06340 MED22-202ENST00000371999 987 ntTSL 3 BASIC21.25■□□□□ 0.99
HLA-DOAP06340 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC21.25■□□□□ 0.99
HLA-DOAP06340 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DOAP06340 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DOAP06340 HIST2H3DP1-201ENST00000401004 416 ntBASIC21.25■□□□□ 0.99
HLA-DOAP06340 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC21.25■□□□□ 0.99
HLA-DOAP06340 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DOAP06340 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DOAP06340 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DOAP06340 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DOAP06340 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DOAP06340 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DOAP06340 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HLA-DOAP06340 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HLA-DOAP06340 PHGDH-209ENST00000641074 1780 ntBASIC21.24■□□□□ 0.99
HLA-DOAP06340 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HLA-DOAP06340 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 FGFR3P6-201ENST00000457012 610 ntBASIC21.24■□□□□ 0.99
HLA-DOAP06340 SCARNA2-201ENST00000458748 420 ntBASIC21.24■□□□□ 0.99
HLA-DOAP06340 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 AC073648.2-201ENST00000510116 352 ntBASIC21.24■□□□□ 0.99
HLA-DOAP06340 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HLA-DOAP06340 AC093010.1-201ENST00000473625 1624 ntBASIC21.24■□□□□ 0.99
HLA-DOAP06340 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
HLA-DOAP06340 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.24■□□□□ 0.99
HLA-DOAP06340 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HLA-DOAP06340 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HLA-DOAP06340 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HLA-DOAP06340 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HLA-DOAP06340 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HLA-DOAP06340 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HLA-DOAP06340 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HLA-DOAP06340 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HLA-DOAP06340 PAN3-AS1-201ENST00000563843 1351 ntBASIC21.23■□□□□ 0.99
HLA-DOAP06340 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HLA-DOAP06340 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
HLA-DOAP06340 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HLA-DOAP06340 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.23■□□□□ 0.99
HLA-DOAP06340 HCG11-201ENST00000411553 5696 ntBASIC21.23■□□□□ 0.99
HLA-DOAP06340 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HLA-DOAP06340 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HLA-DOAP06340 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC21.23■□□□□ 0.99
HLA-DOAP06340 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms