Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.15■□□□□ 0.02
ABCA1O95477 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA1O95477 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
ABCA1O95477 MINOS1P3-201ENST00000457048 203 ntBASIC15.15■□□□□ 0.02
ABCA1O95477 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA1O95477 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA1O95477 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA1O95477 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.15■□□□□ 0.02
ABCA1O95477 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
ABCA1O95477 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 RCC2P3-201ENST00000418112 1537 ntBASIC15.15■□□□□ 0.02
ABCA1O95477 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA1O95477 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
ABCA1O95477 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
ABCA1O95477 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 IGHV3-22-201ENST00000520721 359 ntBASIC15.15■□□□□ 0.02
ABCA1O95477 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.15■□□□□ 0.02
ABCA1O95477 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC15.15■□□□□ 0.02
ABCA1O95477 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA1O95477 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA1O95477 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
ABCA1O95477 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
ABCA1O95477 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA1O95477 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC15.14■□□□□ 0.01
ABCA1O95477 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 HES2-202ENST00000377836 507 ntTSL 2 BASIC15.14■□□□□ 0.01
ABCA1O95477 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
ABCA1O95477 IGHV3-41-201ENST00000613121 348 ntBASIC15.14■□□□□ 0.01
ABCA1O95477 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC15.14■□□□□ 0.01
ABCA1O95477 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
ABCA1O95477 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
ABCA1O95477 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
ABCA1O95477 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
ABCA1O95477 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
ABCA1O95477 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC15.14■□□□□ 0.01
ABCA1O95477 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
ABCA1O95477 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
ABCA1O95477 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 AC096582.2-201ENST00000510860 516 ntBASIC15.14■□□□□ 0.01
ABCA1O95477 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.14■□□□□ 0.01
ABCA1O95477 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.14■□□□□ 0.01
ABCA1O95477 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC15.14■□□□□ 0.01
ABCA1O95477 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC15.14■□□□□ 0.01
ABCA1O95477 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA1O95477 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC15.14■□□□□ 0.01
ABCA1O95477 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
ABCA1O95477 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.13■□□□□ 0.01
ABCA1O95477 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC15.13■□□□□ 0.01
ABCA1O95477 FP475955.4-201ENST00000623131 1990 ntBASIC15.13■□□□□ 0.01
ABCA1O95477 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC15.13■□□□□ 0.01
ABCA1O95477 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.13■□□□□ 0.01
ABCA1O95477 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC15.13■□□□□ 0.01
ABCA1O95477 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms