Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.96■□□□□ 0.95
CTDNEP1O95476 AC112907.2-201ENST00000448639 330 ntBASIC20.96■□□□□ 0.95
CTDNEP1O95476 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.96■□□□□ 0.95
CTDNEP1O95476 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.96■□□□□ 0.95
CTDNEP1O95476 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CTDNEP1O95476 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDNEP1O95476 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDNEP1O95476 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTDNEP1O95476 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CTDNEP1O95476 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CTDNEP1O95476 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CTDNEP1O95476 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CTDNEP1O95476 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CTDNEP1O95476 PP12613-201ENST00000424958 2230 ntBASIC20.95■□□□□ 0.94
CTDNEP1O95476 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.95■□□□□ 0.94
CTDNEP1O95476 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.95■□□□□ 0.94
CTDNEP1O95476 AC063952.2-201ENST00000498792 1227 ntBASIC20.95■□□□□ 0.94
CTDNEP1O95476 AC008687.5-201ENST00000593746 558 ntBASIC20.95■□□□□ 0.94
CTDNEP1O95476 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.95■□□□□ 0.94
CTDNEP1O95476 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.95■□□□□ 0.94
CTDNEP1O95476 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
CTDNEP1O95476 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTDNEP1O95476 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 HOMER2P1-201ENST00000455653 964 ntBASIC20.94■□□□□ 0.94
CTDNEP1O95476 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.94■□□□□ 0.94
CTDNEP1O95476 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 KRT8P47-201ENST00000604727 1398 ntBASIC20.94■□□□□ 0.94
CTDNEP1O95476 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
CTDNEP1O95476 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTDNEP1O95476 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDNEP1O95476 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDNEP1O95476 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTDNEP1O95476 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.93■□□□□ 0.94
CTDNEP1O95476 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDNEP1O95476 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.93■□□□□ 0.94
CTDNEP1O95476 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDNEP1O95476 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTDNEP1O95476 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CTDNEP1O95476 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CTDNEP1O95476 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDNEP1O95476 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.93■□□□□ 0.94
CTDNEP1O95476 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.93■□□□□ 0.94
CTDNEP1O95476 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.93■□□□□ 0.94
CTDNEP1O95476 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CTDNEP1O95476 AC083849.1-201ENST00000615227 514 ntBASIC20.93■□□□□ 0.94
CTDNEP1O95476 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.93■□□□□ 0.94
CTDNEP1O95476 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CTDNEP1O95476 AC020763.4-201ENST00000623414 4170 ntBASIC20.93■□□□□ 0.94
CTDNEP1O95476 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDNEP1O95476 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CTDNEP1O95476 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTDNEP1O95476 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDNEP1O95476 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTDNEP1O95476 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms