Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RTN3O95197 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RTN3O95197 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.04■□□□□ 0.64
RTN3O95197 AC104819.1-201ENST00000504587 486 ntBASIC19.04■□□□□ 0.64
RTN3O95197 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
RTN3O95197 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.04■□□□□ 0.64
RTN3O95197 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RTN3O95197 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.04■□□□□ 0.64
RTN3O95197 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
RTN3O95197 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.04■□□□□ 0.64
RTN3O95197 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RTN3O95197 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RTN3O95197 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RTN3O95197 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
RTN3O95197 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
RTN3O95197 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.04■□□□□ 0.64
RTN3O95197 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
RTN3O95197 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
RTN3O95197 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.04■□□□□ 0.64
RTN3O95197 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.03■□□□□ 0.64
RTN3O95197 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
RTN3O95197 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.03■□□□□ 0.64
RTN3O95197 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 AC093503.3-201ENST00000624917 2352 ntBASIC19.03■□□□□ 0.64
RTN3O95197 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 AL450487.1-201ENST00000426799 995 ntBASIC19.03■□□□□ 0.64
RTN3O95197 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.03■□□□□ 0.64
RTN3O95197 AC009154.2-201ENST00000621177 724 ntBASIC19.03■□□□□ 0.64
RTN3O95197 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.03■□□□□ 0.64
RTN3O95197 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.03■□□□□ 0.64
RTN3O95197 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
RTN3O95197 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.03■□□□□ 0.64
RTN3O95197 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.03■□□□□ 0.64
RTN3O95197 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
RTN3O95197 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.03■□□□□ 0.64
RTN3O95197 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RTN3O95197 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
RTN3O95197 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.02■□□□□ 0.64
RTN3O95197 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
RTN3O95197 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
RTN3O95197 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
RTN3O95197 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.02■□□□□ 0.64
RTN3O95197 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
RTN3O95197 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.02■□□□□ 0.64
RTN3O95197 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.02■□□□□ 0.64
RTN3O95197 AC074051.2-201ENST00000565115 352 ntBASIC19.02■□□□□ 0.64
RTN3O95197 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RTN3O95197 AC012313.10-201ENST00000623509 926 ntBASIC19.02■□□□□ 0.64
RTN3O95197 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.02■□□□□ 0.64
RTN3O95197 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
RTN3O95197 LINC00602-201ENST00000629776 2065 ntBASIC19.02■□□□□ 0.63
RTN3O95197 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.02■□□□□ 0.63
RTN3O95197 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.02■□□□□ 0.63
RTN3O95197 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
RTN3O95197 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.02■□□□□ 0.63
RTN3O95197 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
RTN3O95197 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RTN3O95197 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.01■□□□□ 0.63
RTN3O95197 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.01■□□□□ 0.63
RTN3O95197 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RTN3O95197 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RTN3O95197 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RTN3O95197 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RTN3O95197 KRT17P6-201ENST00000453795 1220 ntBASIC19.01■□□□□ 0.63
RTN3O95197 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.01■□□□□ 0.63
RTN3O95197 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.01■□□□□ 0.63
RTN3O95197 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.01■□□□□ 0.63
RTN3O95197 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
RTN3O95197 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RTN3O95197 AL353801.3-201ENST00000609898 542 ntBASIC19.01■□□□□ 0.63
RTN3O95197 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RTN3O95197 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.01■□□□□ 0.63
RTN3O95197 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RTN3O95197 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms