Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.04■□□□□ 0.32
LDB3O75112 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.04■□□□□ 0.32
LDB3O75112 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.04■□□□□ 0.32
LDB3O75112 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LDB3O75112 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LDB3O75112 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LDB3O75112 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 AC113404.2-201ENST00000507884 177 ntBASIC17.03■□□□□ 0.32
LDB3O75112 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.03■□□□□ 0.32
LDB3O75112 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.03■□□□□ 0.32
LDB3O75112 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.03■□□□□ 0.32
LDB3O75112 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.03■□□□□ 0.32
LDB3O75112 GPR32P1-201ENST00000601788 811 ntBASIC17.03■□□□□ 0.32
LDB3O75112 AL358472.4-201ENST00000633140 710 ntBASIC17.03■□□□□ 0.32
LDB3O75112 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
LDB3O75112 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LDB3O75112 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 AC132938.6-201ENST00000623828 1655 ntBASIC17.03■□□□□ 0.32
LDB3O75112 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.03■□□□□ 0.32
LDB3O75112 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB3O75112 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDB3O75112 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
LDB3O75112 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.02■□□□□ 0.32
LDB3O75112 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDB3O75112 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
LDB3O75112 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.02■□□□□ 0.32
LDB3O75112 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
LDB3O75112 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.02■□□□□ 0.32
LDB3O75112 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.02■□□□□ 0.32
LDB3O75112 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.02■□□□□ 0.32
LDB3O75112 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDB3O75112 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDB3O75112 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDB3O75112 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LDB3O75112 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
LDB3O75112 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.32
LDB3O75112 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDB3O75112 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDB3O75112 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LDB3O75112 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.02■□□□□ 0.32
LDB3O75112 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.02■□□□□ 0.32
LDB3O75112 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.02■□□□□ 0.32
LDB3O75112 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.02■□□□□ 0.32
LDB3O75112 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDB3O75112 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
LDB3O75112 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
LDB3O75112 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.02■□□□□ 0.31
LDB3O75112 LINC00167-201ENST00000530583 1419 ntBASIC17.02■□□□□ 0.31
LDB3O75112 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
LDB3O75112 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.31
LDB3O75112 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
LDB3O75112 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LDB3O75112 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
LDB3O75112 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LDB3O75112 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
LDB3O75112 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
LDB3O75112 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
LDB3O75112 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
LDB3O75112 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
LDB3O75112 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
LDB3O75112 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.01■□□□□ 0.31
LDB3O75112 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.01■□□□□ 0.31
LDB3O75112 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
LDB3O75112 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.01■□□□□ 0.31
LDB3O75112 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
LDB3O75112 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.01■□□□□ 0.31
LDB3O75112 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms