Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH4O15457 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH4O15457 AL354751.1-201ENST00000412768 1863 ntBASIC20.28■□□□□ 0.84
MSH4O15457 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.28■□□□□ 0.84
MSH4O15457 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
MSH4O15457 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
MSH4O15457 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
MSH4O15457 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.28■□□□□ 0.84
MSH4O15457 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
MSH4O15457 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.28■□□□□ 0.84
MSH4O15457 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.28■□□□□ 0.84
MSH4O15457 VENTXP7-201ENST00000475503 772 ntBASIC20.28■□□□□ 0.84
MSH4O15457 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.28■□□□□ 0.84
MSH4O15457 AC104819.1-201ENST00000504587 486 ntBASIC20.28■□□□□ 0.84
MSH4O15457 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.28■□□□□ 0.84
MSH4O15457 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.28■□□□□ 0.84
MSH4O15457 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
MSH4O15457 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
MSH4O15457 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH4O15457 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH4O15457 NSUN5P1-202ENST00000421140 1535 ntBASIC20.27■□□□□ 0.84
MSH4O15457 NSUN5P2-203ENST00000457352 1529 ntBASIC20.27■□□□□ 0.84
MSH4O15457 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MSH4O15457 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
MSH4O15457 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH4O15457 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH4O15457 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.27■□□□□ 0.84
MSH4O15457 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH4O15457 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.27■□□□□ 0.84
MSH4O15457 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH4O15457 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MSH4O15457 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH4O15457 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.27■□□□□ 0.84
MSH4O15457 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH4O15457 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MSH4O15457 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
MSH4O15457 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH4O15457 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.27■□□□□ 0.84
MSH4O15457 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
MSH4O15457 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
MSH4O15457 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.83
MSH4O15457 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
MSH4O15457 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH4O15457 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.26■□□□□ 0.83
MSH4O15457 KRT8P47-201ENST00000604727 1398 ntBASIC20.26■□□□□ 0.83
MSH4O15457 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
MSH4O15457 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
MSH4O15457 NUS1P1-201ENST00000446295 882 ntBASIC20.26■□□□□ 0.83
MSH4O15457 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
MSH4O15457 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.26■□□□□ 0.83
MSH4O15457 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.26■□□□□ 0.83
MSH4O15457 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH4O15457 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.26■□□□□ 0.83
MSH4O15457 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH4O15457 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH4O15457 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH4O15457 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH4O15457 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.26■□□□□ 0.83
MSH4O15457 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
MSH4O15457 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH4O15457 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH4O15457 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms