Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 ADH5P3-201ENST00000433842 1137 ntBASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 AC097493.3-201ENST00000509725 367 ntBASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 KRT8P48-201ENST00000515599 1220 ntBASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 AL158211.3-201ENST00000607385 239 ntBASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 SPTSSB-204ENST00000617024 1292 ntBASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 AF106564.1-201ENST00000607058 2553 ntBASIC19.9■□□□□ 0.78
CCDC85CA6NKD9 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.89■□□□□ 0.78
CCDC85CA6NKD9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 AC092506.1-202ENST00000401022 528 ntBASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 HCG4-201ENST00000418983 998 ntBASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 FAM58DP-201ENST00000428076 619 ntBASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 NCF1C-201ENST00000438382 1427 ntBASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 AC092552.1-201ENST00000547243 906 ntBASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 LINC00602-201ENST00000629776 2065 ntBASIC19.89■□□□□ 0.77
CCDC85CA6NKD9 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 Z98044.1-201ENST00000632503 1764 ntBASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 AC007967.3-201ENST00000434308 558 ntBASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 RBPMS2P1-201ENST00000437762 623 ntBASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC85CA6NKD9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 AC008677.1-201ENST00000519230 1561 ntBASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 FAM86MP-201ENST00000340703 885 ntBASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 AL671277.1-201ENST00000429656 993 ntBASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 AC069120.2-201ENST00000524091 540 ntBASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 OR7E47P-204ENST00000575924 449 ntBASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
CCDC85CA6NKD9 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC85CA6NKD9 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms