Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
DDX41Q9UJV9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC28.34■■■□□ 2.13
DDX41Q9UJV9 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC28.34■■■□□ 2.13
DDX41Q9UJV9 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC28.34■■■□□ 2.13
DDX41Q9UJV9 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
DDX41Q9UJV9 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
DDX41Q9UJV9 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
DDX41Q9UJV9 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC28.33■■■□□ 2.13
DDX41Q9UJV9 AC012354.3-201ENST00000623734 483 ntBASIC28.33■■■□□ 2.13
DDX41Q9UJV9 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
DDX41Q9UJV9 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC28.32■■■□□ 2.12
DDX41Q9UJV9 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
DDX41Q9UJV9 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
DDX41Q9UJV9 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
DDX41Q9UJV9 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
DDX41Q9UJV9 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
DDX41Q9UJV9 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC28.31■■■□□ 2.12
DDX41Q9UJV9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
DDX41Q9UJV9 AP002414.2-202ENST00000590929 1450 ntBASIC28.31■■■□□ 2.12
DDX41Q9UJV9 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
DDX41Q9UJV9 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC28.31■■■□□ 2.12
DDX41Q9UJV9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
DDX41Q9UJV9 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
DDX41Q9UJV9 AL121749.1-202ENST00000609313 2153 ntBASIC28.3■■■□□ 2.12
DDX41Q9UJV9 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC28.3■■■□□ 2.12
DDX41Q9UJV9 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC28.29■■■□□ 2.12
DDX41Q9UJV9 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC28.29■■■□□ 2.12
DDX41Q9UJV9 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
DDX41Q9UJV9 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.29■■■□□ 2.12
DDX41Q9UJV9 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
DDX41Q9UJV9 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
DDX41Q9UJV9 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
DDX41Q9UJV9 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
DDX41Q9UJV9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
DDX41Q9UJV9 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
DDX41Q9UJV9 AL359258.2-201ENST00000564063 1566 ntBASIC28.28■■■□□ 2.12
DDX41Q9UJV9 AC018358.1-201ENST00000631079 1402 ntBASIC28.27■■■□□ 2.12
DDX41Q9UJV9 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
DDX41Q9UJV9 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
DDX41Q9UJV9 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
DDX41Q9UJV9 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC28.26■■■□□ 2.12
DDX41Q9UJV9 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
DDX41Q9UJV9 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
DDX41Q9UJV9 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
DDX41Q9UJV9 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
DDX41Q9UJV9 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC28.24■■■□□ 2.11
DDX41Q9UJV9 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
DDX41Q9UJV9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
DDX41Q9UJV9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
DDX41Q9UJV9 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
DDX41Q9UJV9 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC28.23■■■□□ 2.11
DDX41Q9UJV9 KRT18P60-201ENST00000312876 1297 ntBASIC28.22■■■□□ 2.11
DDX41Q9UJV9 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
DDX41Q9UJV9 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
DDX41Q9UJV9 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
DDX41Q9UJV9 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
DDX41Q9UJV9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC28.21■■■□□ 2.11
DDX41Q9UJV9 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
DDX41Q9UJV9 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
DDX41Q9UJV9 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
DDX41Q9UJV9 AL033527.3-201ENST00000566366 1196 ntBASIC28.2■■■□□ 2.1
DDX41Q9UJV9 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC28.2■■■□□ 2.1
DDX41Q9UJV9 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC28.2■■■□□ 2.1
DDX41Q9UJV9 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
DDX41Q9UJV9 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
DDX41Q9UJV9 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
DDX41Q9UJV9 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
DDX41Q9UJV9 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
DDX41Q9UJV9 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
DDX41Q9UJV9 AC007029.1-201ENST00000604183 313 ntBASIC28.19■■■□□ 2.1
DDX41Q9UJV9 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
DDX41Q9UJV9 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
DDX41Q9UJV9 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
DDX41Q9UJV9 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC28.18■■■□□ 2.1
DDX41Q9UJV9 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC28.18■■■□□ 2.1
DDX41Q9UJV9 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC28.18■■■□□ 2.1
DDX41Q9UJV9 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
DDX41Q9UJV9 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
DDX41Q9UJV9 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
DDX41Q9UJV9 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
DDX41Q9UJV9 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
DDX41Q9UJV9 SMPD5-203ENST00000639008 1464 ntBASIC28.17■■■□□ 2.1
DDX41Q9UJV9 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC28.17■■■□□ 2.1
DDX41Q9UJV9 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
DDX41Q9UJV9 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
DDX41Q9UJV9 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
DDX41Q9UJV9 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.17■■■□□ 2.1
DDX41Q9UJV9 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC28.16■■■□□ 2.1
DDX41Q9UJV9 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
DDX41Q9UJV9 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
DDX41Q9UJV9 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC28.16■■■□□ 2.1
DDX41Q9UJV9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
DDX41Q9UJV9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
DDX41Q9UJV9 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
DDX41Q9UJV9 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC28.15■■■□□ 2.1
DDX41Q9UJV9 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
DDX41Q9UJV9 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC28.14■■■□□ 2.1
DDX41Q9UJV9 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
DDX41Q9UJV9 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
DDX41Q9UJV9 AC004987.1-201ENST00000428627 508 ntBASIC28.13■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms