Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.12■■□□□ 1.13
CLCF1Q9UBD9 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
CLCF1Q9UBD9 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
CLCF1Q9UBD9 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CLCF1Q9UBD9 WHAMMP3-201ENST00000611636 1609 ntBASIC22.1■■□□□ 1.13
CLCF1Q9UBD9 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CLCF1Q9UBD9 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CLCF1Q9UBD9 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CLCF1Q9UBD9 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC22.09■■□□□ 1.13
CLCF1Q9UBD9 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CLCF1Q9UBD9 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
CLCF1Q9UBD9 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC22.08■■□□□ 1.13
CLCF1Q9UBD9 AC012354.3-201ENST00000623734 483 ntBASIC22.08■■□□□ 1.13
CLCF1Q9UBD9 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CLCF1Q9UBD9 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CLCF1Q9UBD9 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
CLCF1Q9UBD9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CLCF1Q9UBD9 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22.07■■□□□ 1.12
CLCF1Q9UBD9 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
CLCF1Q9UBD9 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CLCF1Q9UBD9 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
CLCF1Q9UBD9 KRT18P60-201ENST00000312876 1297 ntBASIC22.06■■□□□ 1.12
CLCF1Q9UBD9 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CLCF1Q9UBD9 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
CLCF1Q9UBD9 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CLCF1Q9UBD9 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CLCF1Q9UBD9 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CLCF1Q9UBD9 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
CLCF1Q9UBD9 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.05■■□□□ 1.12
CLCF1Q9UBD9 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.04■■□□□ 1.12
CLCF1Q9UBD9 AC009831.1-201ENST00000580420 1582 ntBASIC22.04■■□□□ 1.12
CLCF1Q9UBD9 GFER-205ENST00000569451 517 ntTSL 5 BASIC22.04■■□□□ 1.12
CLCF1Q9UBD9 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CLCF1Q9UBD9 LINC01003-201ENST00000564834 1764 ntBASIC22.04■■□□□ 1.12
CLCF1Q9UBD9 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.04■■□□□ 1.12
CLCF1Q9UBD9 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
CLCF1Q9UBD9 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CLCF1Q9UBD9 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CLCF1Q9UBD9 RP9P-202ENST00000450133 1212 ntBASIC22.03■■□□□ 1.12
CLCF1Q9UBD9 PFN2-211ENST00000489155 636 ntTSL 4 BASIC22.03■■□□□ 1.12
CLCF1Q9UBD9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CLCF1Q9UBD9 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CLCF1Q9UBD9 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CLCF1Q9UBD9 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CLCF1Q9UBD9 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CLCF1Q9UBD9 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC22.02■■□□□ 1.12
CLCF1Q9UBD9 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CLCF1Q9UBD9 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CLCF1Q9UBD9 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CLCF1Q9UBD9 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
CLCF1Q9UBD9 MIR3960-201ENST00000583311 91 ntBASIC22.01■■□□□ 1.11
CLCF1Q9UBD9 AC026202.3-201ENST00000600805 1127 ntBASIC22.01■■□□□ 1.11
CLCF1Q9UBD9 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
CLCF1Q9UBD9 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.01■■□□□ 1.11
CLCF1Q9UBD9 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
CLCF1Q9UBD9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22■■□□□ 1.11
CLCF1Q9UBD9 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC22■■□□□ 1.11
CLCF1Q9UBD9 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CLCF1Q9UBD9 AL359504.2-201ENST00000605506 1601 ntBASIC22■■□□□ 1.11
CLCF1Q9UBD9 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CLCF1Q9UBD9 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22■■□□□ 1.11
CLCF1Q9UBD9 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22■■□□□ 1.11
CLCF1Q9UBD9 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22■■□□□ 1.11
CLCF1Q9UBD9 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC22■■□□□ 1.11
CLCF1Q9UBD9 AC133552.2-201ENST00000619106 1032 ntBASIC22■■□□□ 1.11
CLCF1Q9UBD9 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC22■■□□□ 1.11
CLCF1Q9UBD9 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC22■■□□□ 1.11
CLCF1Q9UBD9 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC22■■□□□ 1.11
CLCF1Q9UBD9 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
CLCF1Q9UBD9 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CLCF1Q9UBD9 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CLCF1Q9UBD9 AC093536.1-201ENST00000569153 554 ntBASIC21.99■■□□□ 1.11
CLCF1Q9UBD9 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.99■■□□□ 1.11
CLCF1Q9UBD9 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CLCF1Q9UBD9 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.98■■□□□ 1.11
CLCF1Q9UBD9 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CLCF1Q9UBD9 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CLCF1Q9UBD9 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CLCF1Q9UBD9 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
CLCF1Q9UBD9 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
CLCF1Q9UBD9 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.97■■□□□ 1.11
CLCF1Q9UBD9 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CLCF1Q9UBD9 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CLCF1Q9UBD9 AL592293.1-201ENST00000502889 1188 ntBASIC21.97■■□□□ 1.11
CLCF1Q9UBD9 RAP2CP1-202ENST00000605179 643 ntBASIC21.97■■□□□ 1.11
CLCF1Q9UBD9 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CLCF1Q9UBD9 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.97■■□□□ 1.11
CLCF1Q9UBD9 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
CLCF1Q9UBD9 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CLCF1Q9UBD9 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLCF1Q9UBD9 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLCF1Q9UBD9 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CLCF1Q9UBD9 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CLCF1Q9UBD9 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.11
CLCF1Q9UBD9 AC004987.1-201ENST00000428627 508 ntBASIC21.95■■□□□ 1.1
CLCF1Q9UBD9 AL033527.3-201ENST00000566366 1196 ntBASIC21.95■■□□□ 1.1
CLCF1Q9UBD9 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
CLCF1Q9UBD9 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.95■■□□□ 1.1
CLCF1Q9UBD9 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLCF1Q9UBD9 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms