Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.07■■□□□ 1.76
TTC28Q96AY4 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
TTC28Q96AY4 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
TTC28Q96AY4 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
TTC28Q96AY4 UNC93B8-201ENST00000511903 705 ntBASIC26.06■■□□□ 1.76
TTC28Q96AY4 MIR4787-201ENST00000607364 84 ntBASIC26.06■■□□□ 1.76
TTC28Q96AY4 LONRF2P2-201ENST00000439212 571 ntBASIC26.06■■□□□ 1.76
TTC28Q96AY4 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
TTC28Q96AY4 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
TTC28Q96AY4 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.05■■□□□ 1.76
TTC28Q96AY4 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC26.05■■□□□ 1.76
TTC28Q96AY4 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
TTC28Q96AY4 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
TTC28Q96AY4 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
TTC28Q96AY4 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
TTC28Q96AY4 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
TTC28Q96AY4 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TTC28Q96AY4 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
TTC28Q96AY4 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TTC28Q96AY4 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC26.04■■□□□ 1.76
TTC28Q96AY4 AC133561.4-201ENST00000566112 224 ntBASIC26.04■■□□□ 1.76
TTC28Q96AY4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.03■■□□□ 1.76
TTC28Q96AY4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.03■■□□□ 1.76
TTC28Q96AY4 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
TTC28Q96AY4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
TTC28Q96AY4 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
TTC28Q96AY4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.03■■□□□ 1.76
TTC28Q96AY4 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC26.02■■□□□ 1.76
TTC28Q96AY4 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
TTC28Q96AY4 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.02■■□□□ 1.76
TTC28Q96AY4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.02■■□□□ 1.76
TTC28Q96AY4 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
TTC28Q96AY4 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
TTC28Q96AY4 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
TTC28Q96AY4 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
TTC28Q96AY4 AC127502.1-201ENST00000399971 1502 ntBASIC26.01■■□□□ 1.75
TTC28Q96AY4 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC26.01■■□□□ 1.75
TTC28Q96AY4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC26■■□□□ 1.75
TTC28Q96AY4 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC26■■□□□ 1.75
TTC28Q96AY4 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
TTC28Q96AY4 AC010864.1-201ENST00000609407 1511 ntBASIC26■■□□□ 1.75
TTC28Q96AY4 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TTC28Q96AY4 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
TTC28Q96AY4 KRT16P3-201ENST00000439127 1283 ntBASIC25.98■■□□□ 1.75
TTC28Q96AY4 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
TTC28Q96AY4 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
TTC28Q96AY4 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
TTC28Q96AY4 MTX2-204ENST00000443241 799 ntTSL 3 BASIC25.97■■□□□ 1.75
TTC28Q96AY4 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
TTC28Q96AY4 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC25.96■■□□□ 1.75
TTC28Q96AY4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC25.96■■□□□ 1.75
TTC28Q96AY4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.96■■□□□ 1.75
TTC28Q96AY4 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TTC28Q96AY4 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TTC28Q96AY4 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25.96■■□□□ 1.75
TTC28Q96AY4 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
TTC28Q96AY4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
TTC28Q96AY4 AC018755.3-202ENST00000596210 929 ntBASIC25.94■■□□□ 1.74
TTC28Q96AY4 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC25.94■■□□□ 1.74
TTC28Q96AY4 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.94■■□□□ 1.74
TTC28Q96AY4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.94■■□□□ 1.74
TTC28Q96AY4 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC25.94■■□□□ 1.74
TTC28Q96AY4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
TTC28Q96AY4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.93■■□□□ 1.74
TTC28Q96AY4 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
TTC28Q96AY4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
TTC28Q96AY4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC25.92■■□□□ 1.74
TTC28Q96AY4 AL359258.2-201ENST00000564063 1566 ntBASIC25.92■■□□□ 1.74
TTC28Q96AY4 AC096631.2-201ENST00000436136 790 ntBASIC25.92■■□□□ 1.74
TTC28Q96AY4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
TTC28Q96AY4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC25.91■■□□□ 1.74
TTC28Q96AY4 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC25.91■■□□□ 1.74
TTC28Q96AY4 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
TTC28Q96AY4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
TTC28Q96AY4 AL136116.3-201ENST00000402907 1138 ntBASIC25.9■■□□□ 1.74
TTC28Q96AY4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
TTC28Q96AY4 AC019171.1-201ENST00000601251 1056 ntBASIC25.9■■□□□ 1.74
TTC28Q96AY4 AC135279.3-201ENST00000610945 1311 ntBASIC25.9■■□□□ 1.74
TTC28Q96AY4 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
TTC28Q96AY4 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.74
TTC28Q96AY4 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
TTC28Q96AY4 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC25.89■■□□□ 1.73
TTC28Q96AY4 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
TTC28Q96AY4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC25.88■■□□□ 1.73
TTC28Q96AY4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.88■■□□□ 1.73
TTC28Q96AY4 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC25.88■■□□□ 1.73
TTC28Q96AY4 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC25.88■■□□□ 1.73
TTC28Q96AY4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
TTC28Q96AY4 BX664725.1-201ENST00000438252 379 ntBASIC25.87■■□□□ 1.73
TTC28Q96AY4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
TTC28Q96AY4 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
TTC28Q96AY4 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
TTC28Q96AY4 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
TTC28Q96AY4 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
TTC28Q96AY4 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.86■■□□□ 1.73
TTC28Q96AY4 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
TTC28Q96AY4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.85■■□□□ 1.73
TTC28Q96AY4 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
TTC28Q96AY4 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC25.84■■□□□ 1.73
TTC28Q96AY4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC25.83■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms