Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
USF1P22415 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USF1P22415 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.88■□□□□ 0.93
USF1P22415 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USF1P22415 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USF1P22415 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.88■□□□□ 0.93
USF1P22415 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
USF1P22415 AC129492.7-201ENST00000622992 756 ntBASIC20.87■□□□□ 0.93
USF1P22415 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
USF1P22415 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USF1P22415 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.86■□□□□ 0.93
USF1P22415 AC009831.1-201ENST00000580420 1582 ntBASIC20.86■□□□□ 0.93
USF1P22415 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.86■□□□□ 0.93
USF1P22415 RARRES2P1-201ENST00000474487 481 ntBASIC20.86■□□□□ 0.93
USF1P22415 AL592293.1-201ENST00000502889 1188 ntBASIC20.86■□□□□ 0.93
USF1P22415 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USF1P22415 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
USF1P22415 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USF1P22415 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USF1P22415 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USF1P22415 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
USF1P22415 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.85■□□□□ 0.93
USF1P22415 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.85■□□□□ 0.93
USF1P22415 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USF1P22415 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.84■□□□□ 0.93
USF1P22415 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
USF1P22415 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
USF1P22415 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USF1P22415 DUX4L18-201ENST00000553347 1267 ntBASIC20.84■□□□□ 0.93
USF1P22415 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
USF1P22415 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USF1P22415 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
USF1P22415 AC142086.6-201ENST00000621154 1765 ntBASIC20.83■□□□□ 0.93
USF1P22415 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
USF1P22415 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.82■□□□□ 0.92
USF1P22415 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USF1P22415 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
USF1P22415 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.82■□□□□ 0.92
USF1P22415 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
USF1P22415 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.82■□□□□ 0.92
USF1P22415 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
USF1P22415 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USF1P22415 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
USF1P22415 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.81■□□□□ 0.92
USF1P22415 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USF1P22415 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.81■□□□□ 0.92
USF1P22415 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USF1P22415 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.81■□□□□ 0.92
USF1P22415 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.81■□□□□ 0.92
USF1P22415 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USF1P22415 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USF1P22415 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USF1P22415 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USF1P22415 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.8■□□□□ 0.92
USF1P22415 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USF1P22415 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
USF1P22415 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.8■□□□□ 0.92
USF1P22415 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USF1P22415 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.79■□□□□ 0.92
USF1P22415 AC026202.3-201ENST00000600805 1127 ntBASIC20.79■□□□□ 0.92
USF1P22415 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
USF1P22415 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
USF1P22415 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USF1P22415 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USF1P22415 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USF1P22415 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USF1P22415 AC025884.2-201ENST00000553429 711 ntBASIC20.78■□□□□ 0.92
USF1P22415 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USF1P22415 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USF1P22415 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
USF1P22415 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
USF1P22415 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.77■□□□□ 0.92
USF1P22415 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USF1P22415 RP9P-202ENST00000450133 1212 ntBASIC20.77■□□□□ 0.92
USF1P22415 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.77■□□□□ 0.92
USF1P22415 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USF1P22415 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USF1P22415 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.91
USF1P22415 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USF1P22415 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USF1P22415 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.76■□□□□ 0.91
USF1P22415 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.76■□□□□ 0.91
USF1P22415 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.76■□□□□ 0.91
USF1P22415 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
USF1P22415 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
USF1P22415 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
USF1P22415 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USF1P22415 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USF1P22415 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.75■□□□□ 0.91
USF1P22415 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USF1P22415 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USF1P22415 DRD5P2-201ENST00000421395 2012 ntBASIC20.74■□□□□ 0.91
USF1P22415 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms