Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
HMGB1P09429 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
HMGB1P09429 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC29.3■■■□□ 2.28
HMGB1P09429 AP004609.3-201ENST00000610705 1884 ntBASIC29.3■■■□□ 2.28
HMGB1P09429 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
HMGB1P09429 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
HMGB1P09429 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
HMGB1P09429 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
HMGB1P09429 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
HMGB1P09429 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
HMGB1P09429 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
HMGB1P09429 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
HMGB1P09429 METRNL-202ENST00000570778 967 ntTSL 5 BASIC29.28■■■□□ 2.28
HMGB1P09429 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC29.28■■■□□ 2.28
HMGB1P09429 AC142472.1-201ENST00000612013 1741 ntBASIC29.28■■■□□ 2.28
HMGB1P09429 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
HMGB1P09429 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
HMGB1P09429 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
HMGB1P09429 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
HMGB1P09429 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
HMGB1P09429 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC29.27■■■□□ 2.28
HMGB1P09429 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
HMGB1P09429 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
HMGB1P09429 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
HMGB1P09429 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
HMGB1P09429 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
HMGB1P09429 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
HMGB1P09429 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
HMGB1P09429 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
HMGB1P09429 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
HMGB1P09429 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
HMGB1P09429 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
HMGB1P09429 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
HMGB1P09429 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.23■■■□□ 2.27
HMGB1P09429 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.23■■■□□ 2.27
HMGB1P09429 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC29.23■■■□□ 2.27
HMGB1P09429 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC29.23■■■□□ 2.27
HMGB1P09429 CREM-210ENST00000374721 2020 ntTSL 5 BASIC29.23■■■□□ 2.27
HMGB1P09429 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC29.23■■■□□ 2.27
HMGB1P09429 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
HMGB1P09429 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC29.21■■■□□ 2.27
HMGB1P09429 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC29.21■■■□□ 2.27
HMGB1P09429 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
HMGB1P09429 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC29.21■■■□□ 2.27
HMGB1P09429 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
HMGB1P09429 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC29.2■■■□□ 2.26
HMGB1P09429 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC29.2■■■□□ 2.26
HMGB1P09429 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
HMGB1P09429 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
HMGB1P09429 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
HMGB1P09429 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.19■■■□□ 2.26
HMGB1P09429 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
HMGB1P09429 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC29.19■■■□□ 2.26
HMGB1P09429 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC29.19■■■□□ 2.26
HMGB1P09429 MIR639-201ENST00000384974 98 ntBASIC29.18■■■□□ 2.26
HMGB1P09429 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC29.18■■■□□ 2.26
HMGB1P09429 AL359258.2-201ENST00000564063 1566 ntBASIC29.18■■■□□ 2.26
HMGB1P09429 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
HMGB1P09429 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
HMGB1P09429 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC29.17■■■□□ 2.26
HMGB1P09429 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
HMGB1P09429 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC29.16■■■□□ 2.26
HMGB1P09429 AC126177.7-201ENST00000547904 679 ntBASIC29.15■■■□□ 2.26
HMGB1P09429 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC29.15■■■□□ 2.26
HMGB1P09429 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC29.14■■■□□ 2.26
HMGB1P09429 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC29.14■■■□□ 2.26
HMGB1P09429 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC29.14■■■□□ 2.26
HMGB1P09429 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
HMGB1P09429 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC29.14■■■□□ 2.26
HMGB1P09429 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC29.14■■■□□ 2.25
HMGB1P09429 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
HMGB1P09429 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
HMGB1P09429 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC29.13■■■□□ 2.25
HMGB1P09429 MED25-210ENST00000612854 801 ntTSL 5 BASIC29.13■■■□□ 2.25
HMGB1P09429 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
HMGB1P09429 MED25-214ENST00000622402 642 ntTSL 5 BASIC29.13■■■□□ 2.25
HMGB1P09429 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC29.13■■■□□ 2.25
HMGB1P09429 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
HMGB1P09429 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.12■■■□□ 2.25
HMGB1P09429 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
HMGB1P09429 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC29.11■■■□□ 2.25
HMGB1P09429 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC29.11■■■□□ 2.25
HMGB1P09429 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC29.11■■■□□ 2.25
HMGB1P09429 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC29.11■■■□□ 2.25
HMGB1P09429 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
HMGB1P09429 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
HMGB1P09429 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
HMGB1P09429 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
HMGB1P09429 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
HMGB1P09429 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
HMGB1P09429 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
HMGB1P09429 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.09■■■□□ 2.25
HMGB1P09429 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC29.09■■■□□ 2.25
HMGB1P09429 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
HMGB1P09429 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC29.08■■■□□ 2.25
HMGB1P09429 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC29.08■■■□□ 2.25
HMGB1P09429 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC29.07■■■□□ 2.24
HMGB1P09429 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
HMGB1P09429 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
HMGB1P09429 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC29.07■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms