Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 AC079776.1-201ENST00000401540 1152 ntBASIC16.73■□□□□ 0.27
CHD8Q9HCK8 HCG4-201ENST00000418983 998 ntBASIC16.73■□□□□ 0.27
CHD8Q9HCK8 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 AC096734.2-201ENST00000562054 433 ntBASIC16.73■□□□□ 0.27
CHD8Q9HCK8 MIR4525-201ENST00000580000 75 ntBASIC16.73■□□□□ 0.27
CHD8Q9HCK8 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 KRT8P47-201ENST00000604727 1398 ntBASIC16.73■□□□□ 0.27
CHD8Q9HCK8 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CHD8Q9HCK8 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 NCF1C-201ENST00000438382 1427 ntBASIC16.72■□□□□ 0.27
CHD8Q9HCK8 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 SPTSSB-204ENST00000617024 1292 ntBASIC16.72■□□□□ 0.27
CHD8Q9HCK8 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 AC004790.2-201ENST00000623588 572 ntBASIC16.72■□□□□ 0.27
CHD8Q9HCK8 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.72■□□□□ 0.27
CHD8Q9HCK8 REXO1L3P-201ENST00000622202 1288 ntBASIC16.72■□□□□ 0.27
CHD8Q9HCK8 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 AC069335.1-201ENST00000489972 472 ntBASIC16.71■□□□□ 0.27
CHD8Q9HCK8 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 STK25-234ENST00000535007 2459 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHD8Q9HCK8 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.71■□□□□ 0.26
CHD8Q9HCK8 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CHD8Q9HCK8 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CHD8Q9HCK8 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CHD8Q9HCK8 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
CHD8Q9HCK8 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.71■□□□□ 0.26
CHD8Q9HCK8 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
CHD8Q9HCK8 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 FO538757.1-201ENST00000623083 1397 ntBASIC16.7■□□□□ 0.26
CHD8Q9HCK8 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHD8Q9HCK8 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms