Protein–RNA interactions for Protein: Q9BSH5

HDHD3, Haloacid dehalogenase-like hydrolase domain-containing protein 3, humanhuman

Predicted RBP Predictions only

Length 251 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3Q9BSH5 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 KRT18P29-201ENST00000397031 1267 ntBASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 KRT18P23-201ENST00000435622 1283 ntBASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 CA15P1-201ENST00000481698 905 ntBASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 REXO2-216ENST00000544196 452 ntTSL 3 BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 REXO1L10P-201ENST00000615707 1290 ntBASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 REXO1L12P-201ENST00000622156 912 ntBASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDHD3Q9BSH5 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 FAM201B-201ENST00000458407 597 ntBASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 AC113410.3-201ENST00000623366 203 ntBASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HDHD3Q9BSH5 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 PRORSD1P-201ENST00000295112 541 ntBASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 TSPY20P-201ENST00000450910 630 ntBASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 ITM2C-210ENST00000620962 501 ntBASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDHD3Q9BSH5 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 KRT18P55-202ENST00000578578 1546 ntBASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC15.29■□□□□ 0.04
HDHD3Q9BSH5 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms