Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 AC093503.3-201ENST00000624917 2352 ntBASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 RNPS1P1-201ENST00000507437 918 ntBASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 AL138831.2-201ENST00000606564 490 ntBASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 AC243591.1-201ENST00000452967 1364 ntBASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNGAP1Q96PV0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 AC073648.2-201ENST00000510116 352 ntBASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 INTS4P1-201ENST00000438455 1935 ntBASIC20.54■□□□□ 0.88
SYNGAP1Q96PV0 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 MTCL1P1-201ENST00000446207 792 ntBASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 SCARNA2-201ENST00000458748 420 ntBASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 KRT18P58-201ENST00000527480 1120 ntBASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 MIR7706-201ENST00000613747 67 ntBASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 AC106730.1-201ENST00000566722 1090 ntBASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 AC011467.2-201ENST00000598425 242 ntBASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.53■□□□□ 0.88
SYNGAP1Q96PV0 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.52■□□□□ 0.88
SYNGAP1Q96PV0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.52■□□□□ 0.88
SYNGAP1Q96PV0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNGAP1Q96PV0 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.52■□□□□ 0.88
SYNGAP1Q96PV0 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNGAP1Q96PV0 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNGAP1Q96PV0 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SYNGAP1Q96PV0 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.52■□□□□ 0.88
SYNGAP1Q96PV0 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.52■□□□□ 0.88
SYNGAP1Q96PV0 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNGAP1Q96PV0 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SYNGAP1Q96PV0 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNGAP1Q96PV0 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNGAP1Q96PV0 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
SYNGAP1Q96PV0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.52■□□□□ 0.87
SYNGAP1Q96PV0 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.52■□□□□ 0.87
SYNGAP1Q96PV0 AC139887.3-201ENST00000568585 713 ntBASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms