Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 AL121672.3-201ENST00000608644 468 ntBASIC18.6■□□□□ 0.57
SKA1Q96BD8 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SKA1Q96BD8 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 AC036111.1-201ENST00000533973 1582 ntBASIC18.59■□□□□ 0.57
SKA1Q96BD8 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.59■□□□□ 0.57
SKA1Q96BD8 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 MIR3652-201ENST00000579335 131 ntBASIC18.59■□□□□ 0.57
SKA1Q96BD8 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SKA1Q96BD8 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SKA1Q96BD8 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SKA1Q96BD8 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SKA1Q96BD8 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SKA1Q96BD8 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SKA1Q96BD8 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SKA1Q96BD8 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
SKA1Q96BD8 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.58■□□□□ 0.57
SKA1Q96BD8 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
SKA1Q96BD8 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SKA1Q96BD8 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SKA1Q96BD8 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SKA1Q96BD8 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SKA1Q96BD8 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.58■□□□□ 0.56
SKA1Q96BD8 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.58■□□□□ 0.56
SKA1Q96BD8 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.58■□□□□ 0.56
SKA1Q96BD8 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.58■□□□□ 0.56
SKA1Q96BD8 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SKA1Q96BD8 AC011498.5-201ENST00000592027 486 ntBASIC18.58■□□□□ 0.56
SKA1Q96BD8 AC092329.2-201ENST00000598402 547 ntBASIC18.58■□□□□ 0.56
SKA1Q96BD8 AL121894.2-201ENST00000602977 491 ntBASIC18.58■□□□□ 0.56
SKA1Q96BD8 AC112497.1-201ENST00000624824 639 ntBASIC18.58■□□□□ 0.56
SKA1Q96BD8 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.58■□□□□ 0.56
SKA1Q96BD8 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
SKA1Q96BD8 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SKA1Q96BD8 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.58■□□□□ 0.56
SKA1Q96BD8 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.58■□□□□ 0.56
SKA1Q96BD8 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SKA1Q96BD8 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SKA1Q96BD8 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
SKA1Q96BD8 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SKA1Q96BD8 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.57■□□□□ 0.56
SKA1Q96BD8 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SKA1Q96BD8 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SKA1Q96BD8 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
SKA1Q96BD8 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SKA1Q96BD8 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
SKA1Q96BD8 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SKA1Q96BD8 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms