Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 LINC00265-3P-201ENST00000447588 903 ntBASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 TOB2P1-201ENST00000469761 992 ntBASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
C9orf40Q8IXQ3 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 MTCL1P1-201ENST00000446207 792 ntBASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 DUTP2-201ENST00000519164 463 ntBASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
C9orf40Q8IXQ3 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 AC020763.4-201ENST00000623414 4170 ntBASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
C9orf40Q8IXQ3 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms