Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 AC005521.1-201ENST00000393351 872 ntBASIC21.66■■□□□ 1.06
RNF20Q5VTR2 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RNF20Q5VTR2 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 YBX1P2-201ENST00000489612 999 ntBASIC21.65■■□□□ 1.06
RNF20Q5VTR2 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 AC139887.4-201ENST00000607877 719 ntBASIC21.65■■□□□ 1.06
RNF20Q5VTR2 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.65■■□□□ 1.06
RNF20Q5VTR2 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.06
RNF20Q5VTR2 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.64■■□□□ 1.06
RNF20Q5VTR2 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.64■■□□□ 1.06
RNF20Q5VTR2 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 STARP1-201ENST00000397973 869 ntBASIC21.64■■□□□ 1.05
RNF20Q5VTR2 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.64■■□□□ 1.05
RNF20Q5VTR2 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 AC011558.1-201ENST00000623459 338 ntBASIC21.64■■□□□ 1.05
RNF20Q5VTR2 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF20Q5VTR2 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 DUTP2-201ENST00000519164 463 ntBASIC21.63■■□□□ 1.05
RNF20Q5VTR2 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF20Q5VTR2 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RNF20Q5VTR2 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
RNF20Q5VTR2 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.62■■□□□ 1.05
RNF20Q5VTR2 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF20Q5VTR2 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF20Q5VTR2 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
RNF20Q5VTR2 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.62■■□□□ 1.05
RNF20Q5VTR2 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.62■■□□□ 1.05
RNF20Q5VTR2 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF20Q5VTR2 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF20Q5VTR2 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
RNF20Q5VTR2 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms