Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AP000867.3-201ENST00000524675 377 ntBASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 CIB2-208ENST00000560618 804 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 AL732292.2-201ENST00000609649 430 ntBASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 Z83836.1-201ENST00000624605 1642 ntBASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC144BQ3MJ40 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 TSPY19P-201ENST00000418461 509 ntBASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 TSPY18P-201ENST00000441642 509 ntBASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 PNN-202ENST00000553331 656 ntTSL 3 BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 KRT8P10-201ENST00000450021 1447 ntBASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC144BQ3MJ40 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 MIR564-202ENST00000385049 94 ntBASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC144BQ3MJ40 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.02■□□□□ 0.95
CCDC144BQ3MJ40 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.02■□□□□ 0.95
CCDC144BQ3MJ40 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC144BQ3MJ40 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 EMBP1-201ENST00000458200 901 ntBASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 TOB2P1-201ENST00000469761 992 ntBASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CCDC144BQ3MJ40 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC144BQ3MJ40 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21■□□□□ 0.95
CCDC144BQ3MJ40 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC144BQ3MJ40 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CCDC144BQ3MJ40 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC144BQ3MJ40 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC144BQ3MJ40 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21■□□□□ 0.95
CCDC144BQ3MJ40 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms