Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 AC012640.2-201ENST00000561606 901 ntBASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 IRF8-202ENST00000562492 946 ntTSL 3 BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHROOM1Q2M3G4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SHROOM1Q2M3G4 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 RBM17P3-201ENST00000417687 1192 ntBASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 KRT8P47-201ENST00000604727 1398 ntBASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHROOM1Q2M3G4 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 HIST2H3DP1-201ENST00000401004 416 ntBASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 RPS2P1-201ENST00000434010 821 ntBASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 ABCD1P5-201ENST00000445663 754 ntBASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 AC064862.7-201ENST00000604520 867 ntBASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 AC006538.3-201ENST00000612495 578 ntBASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 AC116407.3-201ENST00000623905 1129 ntBASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 AC098818.2-201ENST00000564925 2320 ntBASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
SHROOM1Q2M3G4 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 AC007967.3-201ENST00000434308 558 ntBASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 POLD2P1-201ENST00000511220 997 ntBASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 COX5A-204ENST00000567270 579 ntTSL 3 BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 AC010460.3-201ENST00000511359 1579 ntBASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHROOM1Q2M3G4 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms