Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.49■□□□□ 0.39
HMGCS1Q01581 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 SEC1P-202ENST00000473944 940 ntBASIC17.49■□□□□ 0.39
HMGCS1Q01581 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 MIR3180-4-201ENST00000582223 153 ntBASIC17.49■□□□□ 0.39
HMGCS1Q01581 FAM87A-204ENST00000613235 858 ntBASIC17.49■□□□□ 0.39
HMGCS1Q01581 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS1Q01581 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
HMGCS1Q01581 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.47■□□□□ 0.39
HMGCS1Q01581 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 AC073912.3-201ENST00000624414 853 ntBASIC17.47■□□□□ 0.39
HMGCS1Q01581 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS1Q01581 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGCS1Q01581 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.46■□□□□ 0.39
HMGCS1Q01581 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGCS1Q01581 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms