Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CDX1P47902 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
CDX1P47902 HMGA1P5-201ENST00000412453 271 ntBASIC14.81□□□□□ -0.04
CDX1P47902 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC14.81□□□□□ -0.04
CDX1P47902 ECEL1P2-202ENST00000465689 757 ntBASIC14.81□□□□□ -0.04
CDX1P47902 GPX4-207ENST00000589115 812 ntTSL 2 BASIC14.81□□□□□ -0.04
CDX1P47902 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC14.81□□□□□ -0.04
CDX1P47902 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC14.81□□□□□ -0.04
CDX1P47902 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC14.81□□□□□ -0.04
CDX1P47902 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
CDX1P47902 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CDX1P47902 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC14.81□□□□□ -0.04
CDX1P47902 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.81□□□□□ -0.04
CDX1P47902 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC14.81□□□□□ -0.04
CDX1P47902 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC14.8□□□□□ -0.04
CDX1P47902 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC14.8□□□□□ -0.04
CDX1P47902 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.8□□□□□ -0.04
CDX1P47902 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC14.8□□□□□ -0.04
CDX1P47902 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
CDX1P47902 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CDX1P47902 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CDX1P47902 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CDX1P47902 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CDX1P47902 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 TERF1P1-201ENST00000311003 1181 ntBASIC14.8□□□□□ -0.04
CDX1P47902 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC14.8□□□□□ -0.04
CDX1P47902 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 AC005521.1-201ENST00000393351 872 ntBASIC14.8□□□□□ -0.04
CDX1P47902 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 TMPOP1-202ENST00000424642 1267 ntBASIC14.8□□□□□ -0.04
CDX1P47902 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC14.8□□□□□ -0.04
CDX1P47902 AL353719.1-201ENST00000566847 864 ntBASIC14.8□□□□□ -0.04
CDX1P47902 AL512604.3-201ENST00000569583 964 ntBASIC14.8□□□□□ -0.04
CDX1P47902 AL023803.3-201ENST00000615559 522 ntBASIC14.8□□□□□ -0.04
CDX1P47902 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 AC092338.2-201ENST00000568827 1415 ntBASIC14.8□□□□□ -0.04
CDX1P47902 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
CDX1P47902 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC14.8□□□□□ -0.04
CDX1P47902 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.8□□□□□ -0.04
CDX1P47902 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
CDX1P47902 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CDX1P47902 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDX1P47902 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CDX1P47902 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
CDX1P47902 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CDX1P47902 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CDX1P47902 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms