Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
SHMT2P34897 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.75■□□□□ 0.43
SHMT2P34897 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.75■□□□□ 0.43
SHMT2P34897 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.75■□□□□ 0.43
SHMT2P34897 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.75■□□□□ 0.43
SHMT2P34897 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
SHMT2P34897 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.75■□□□□ 0.43
SHMT2P34897 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
SHMT2P34897 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.75■□□□□ 0.43
SHMT2P34897 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.75■□□□□ 0.43
SHMT2P34897 IER3-202ENST00000376377 1350 ntBASIC17.75■□□□□ 0.43
SHMT2P34897 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.75■□□□□ 0.43
SHMT2P34897 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 AC073592.3-201ENST00000625118 1834 ntBASIC17.75■□□□□ 0.43
SHMT2P34897 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.74■□□□□ 0.43
SHMT2P34897 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
SHMT2P34897 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.74■□□□□ 0.43
SHMT2P34897 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SHMT2P34897 AC126763.1-201ENST00000552015 2118 ntBASIC17.74■□□□□ 0.43
SHMT2P34897 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.74■□□□□ 0.43
SHMT2P34897 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.74■□□□□ 0.43
SHMT2P34897 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.74■□□□□ 0.43
SHMT2P34897 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
SHMT2P34897 AC024563.2-201ENST00000603282 481 ntBASIC17.74■□□□□ 0.43
SHMT2P34897 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
SHMT2P34897 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.74■□□□□ 0.43
SHMT2P34897 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.74■□□□□ 0.43
SHMT2P34897 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.74■□□□□ 0.43
SHMT2P34897 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.74■□□□□ 0.43
SHMT2P34897 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.74■□□□□ 0.43
SHMT2P34897 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.74■□□□□ 0.43
SHMT2P34897 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.74■□□□□ 0.43
SHMT2P34897 AL162741.1-201ENST00000565563 1558 ntBASIC17.74■□□□□ 0.43
SHMT2P34897 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
SHMT2P34897 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.74■□□□□ 0.43
SHMT2P34897 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHMT2P34897 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.73■□□□□ 0.43
SHMT2P34897 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHMT2P34897 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHMT2P34897 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
SHMT2P34897 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHMT2P34897 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHMT2P34897 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.73■□□□□ 0.43
SHMT2P34897 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.73■□□□□ 0.43
SHMT2P34897 KRT18P48-201ENST00000434763 852 ntBASIC17.73■□□□□ 0.43
SHMT2P34897 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.73■□□□□ 0.43
SHMT2P34897 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.73■□□□□ 0.43
SHMT2P34897 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.73■□□□□ 0.43
SHMT2P34897 AC116407.4-201ENST00000623319 1061 ntBASIC17.73■□□□□ 0.43
SHMT2P34897 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.73■□□□□ 0.43
SHMT2P34897 KRT89P-201ENST00000620027 1478 ntBASIC17.73■□□□□ 0.43
SHMT2P34897 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHMT2P34897 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SHMT2P34897 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
SHMT2P34897 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHMT2P34897 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHMT2P34897 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHMT2P34897 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHMT2P34897 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHMT2P34897 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.72■□□□□ 0.43
SHMT2P34897 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.72■□□□□ 0.43
SHMT2P34897 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
SHMT2P34897 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms