Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHRNA3P32297 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.13■□□□□ 0.65
CHRNA3P32297 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CHRNA3P32297 AC008622.2-201ENST00000617006 1229 ntBASIC19.13■□□□□ 0.65
CHRNA3P32297 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHRNA3P32297 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHRNA3P32297 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHRNA3P32297 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHRNA3P32297 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CHRNA3P32297 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHRNA3P32297 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHRNA3P32297 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHRNA3P32297 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHRNA3P32297 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHRNA3P32297 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CHRNA3P32297 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.12■□□□□ 0.65
CHRNA3P32297 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CHRNA3P32297 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.12■□□□□ 0.65
CHRNA3P32297 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.12■□□□□ 0.65
CHRNA3P32297 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CHRNA3P32297 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.12■□□□□ 0.65
CHRNA3P32297 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CHRNA3P32297 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 MIR564-202ENST00000385049 94 ntBASIC19.12■□□□□ 0.65
CHRNA3P32297 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 MIR4674-201ENST00000582457 87 ntBASIC19.12■□□□□ 0.65
CHRNA3P32297 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CHRNA3P32297 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.12■□□□□ 0.65
CHRNA3P32297 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.12■□□□□ 0.65
CHRNA3P32297 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHRNA3P32297 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.11■□□□□ 0.65
CHRNA3P32297 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHRNA3P32297 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.11■□□□□ 0.65
CHRNA3P32297 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.11■□□□□ 0.65
CHRNA3P32297 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHRNA3P32297 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.11■□□□□ 0.65
CHRNA3P32297 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.11■□□□□ 0.65
CHRNA3P32297 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CHRNA3P32297 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHRNA3P32297 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHRNA3P32297 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.11■□□□□ 0.65
CHRNA3P32297 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CHRNA3P32297 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CHRNA3P32297 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.11■□□□□ 0.65
CHRNA3P32297 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.11■□□□□ 0.65
CHRNA3P32297 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.11■□□□□ 0.65
CHRNA3P32297 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.11■□□□□ 0.65
CHRNA3P32297 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CHRNA3P32297 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CHRNA3P32297 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHRNA3P32297 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHRNA3P32297 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHRNA3P32297 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHRNA3P32297 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHRNA3P32297 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.11■□□□□ 0.65
CHRNA3P32297 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.11■□□□□ 0.65
CHRNA3P32297 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.11■□□□□ 0.65
CHRNA3P32297 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHRNA3P32297 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
CHRNA3P32297 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CHRNA3P32297 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.1■□□□□ 0.65
CHRNA3P32297 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.1■□□□□ 0.65
CHRNA3P32297 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.1■□□□□ 0.65
CHRNA3P32297 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CHRNA3P32297 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.1■□□□□ 0.65
CHRNA3P32297 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 ARMC10P1-201ENST00000313754 855 ntBASIC19.1■□□□□ 0.65
CHRNA3P32297 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.1■□□□□ 0.65
CHRNA3P32297 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.1■□□□□ 0.65
CHRNA3P32297 YBX1P2-201ENST00000489612 999 ntBASIC19.1■□□□□ 0.65
CHRNA3P32297 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.1■□□□□ 0.65
CHRNA3P32297 WWOX-216ENST00000569818 525 ntBASIC19.1■□□□□ 0.65
CHRNA3P32297 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.1■□□□□ 0.65
CHRNA3P32297 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.1■□□□□ 0.65
CHRNA3P32297 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CHRNA3P32297 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHRNA3P32297 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CHRNA3P32297 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms