Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.22■□□□□ 0.51
PTPN4P29074 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.22■□□□□ 0.51
PTPN4P29074 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN4P29074 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.22■□□□□ 0.51
PTPN4P29074 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PTPN4P29074 FAM87A-204ENST00000613235 858 ntBASIC18.22■□□□□ 0.51
PTPN4P29074 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.22■□□□□ 0.51
PTPN4P29074 AC116562.4-202ENST00000641738 218 ntBASIC18.22■□□□□ 0.51
PTPN4P29074 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.22■□□□□ 0.51
PTPN4P29074 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN4P29074 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN4P29074 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
PTPN4P29074 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN4P29074 AC093677.2-201ENST00000600169 1863 ntBASIC18.22■□□□□ 0.51
PTPN4P29074 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
PTPN4P29074 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.22■□□□□ 0.51
PTPN4P29074 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN4P29074 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN4P29074 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN4P29074 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.21■□□□□ 0.51
PTPN4P29074 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.21■□□□□ 0.51
PTPN4P29074 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN4P29074 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
PTPN4P29074 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN4P29074 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN4P29074 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN4P29074 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN4P29074 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN4P29074 OR6D1P-202ENST00000641007 5290 ntBASIC18.21■□□□□ 0.51
PTPN4P29074 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PTPN4P29074 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
PTPN4P29074 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PTPN4P29074 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.21■□□□□ 0.51
PTPN4P29074 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
PTPN4P29074 CCR12P-201ENST00000446203 998 ntBASIC18.21■□□□□ 0.51
PTPN4P29074 AC091390.4-202ENST00000476426 537 ntBASIC18.21■□□□□ 0.51
PTPN4P29074 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.21■□□□□ 0.51
PTPN4P29074 NTF6B-201ENST00000591913 560 ntBASIC18.21■□□□□ 0.51
PTPN4P29074 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PTPN4P29074 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN4P29074 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.21■□□□□ 0.51
PTPN4P29074 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN4P29074 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.21■□□□□ 0.51
PTPN4P29074 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.21■□□□□ 0.51
PTPN4P29074 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
PTPN4P29074 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
PTPN4P29074 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
PTPN4P29074 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
PTPN4P29074 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.2■□□□□ 0.5
PTPN4P29074 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.2■□□□□ 0.5
PTPN4P29074 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.2■□□□□ 0.5
PTPN4P29074 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 HMGA1P5-201ENST00000412453 271 ntBASIC18.2■□□□□ 0.5
PTPN4P29074 SLC25A1P2-201ENST00000430693 912 ntBASIC18.2■□□□□ 0.5
PTPN4P29074 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.2■□□□□ 0.5
PTPN4P29074 Z85996.1-201ENST00000494644 937 ntBASIC18.2■□□□□ 0.5
PTPN4P29074 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 AC006011.2-201ENST00000621313 1158 ntBASIC18.2■□□□□ 0.5
PTPN4P29074 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.2■□□□□ 0.5
PTPN4P29074 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
PTPN4P29074 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
PTPN4P29074 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.2■□□□□ 0.5
PTPN4P29074 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.2■□□□□ 0.5
PTPN4P29074 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN4P29074 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.2■□□□□ 0.5
PTPN4P29074 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.2■□□□□ 0.5
PTPN4P29074 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.19■□□□□ 0.5
PTPN4P29074 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN4P29074 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.19■□□□□ 0.5
PTPN4P29074 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN4P29074 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN4P29074 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
PTPN4P29074 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN4P29074 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN4P29074 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN4P29074 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN4P29074 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN4P29074 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN4P29074 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN4P29074 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN4P29074 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms