Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC28.1■■■□□ 2.09
PCF11O94913 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PCF11O94913 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PCF11O94913 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
PCF11O94913 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC28.1■■■□□ 2.09
PCF11O94913 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
PCF11O94913 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PCF11O94913 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC28.1■■■□□ 2.09
PCF11O94913 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC28.1■■■□□ 2.09
PCF11O94913 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC28.1■■■□□ 2.09
PCF11O94913 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC28.1■■■□□ 2.09
PCF11O94913 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
PCF11O94913 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PCF11O94913 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
PCF11O94913 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC28.09■■■□□ 2.09
PCF11O94913 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC28.09■■■□□ 2.09
PCF11O94913 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC28.09■■■□□ 2.09
PCF11O94913 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC28.09■■■□□ 2.09
PCF11O94913 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC28.09■■■□□ 2.09
PCF11O94913 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC28.09■■■□□ 2.09
PCF11O94913 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC28.09■■■□□ 2.09
PCF11O94913 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PCF11O94913 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
PCF11O94913 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC28.08■■■□□ 2.09
PCF11O94913 OR7E14P-202ENST00000530490 1290 ntBASIC28.08■■■□□ 2.09
PCF11O94913 AC034105.1-201ENST00000563488 319 ntBASIC28.08■■■□□ 2.09
PCF11O94913 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC28.08■■■□□ 2.09
PCF11O94913 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC28.08■■■□□ 2.09
PCF11O94913 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC28.08■■■□□ 2.09
PCF11O94913 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
PCF11O94913 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
PCF11O94913 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
PCF11O94913 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
PCF11O94913 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
PCF11O94913 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
PCF11O94913 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
PCF11O94913 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
PCF11O94913 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC28.07■■■□□ 2.08
PCF11O94913 PGAM5P1-201ENST00000518923 814 ntBASIC28.07■■■□□ 2.08
PCF11O94913 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC28.07■■■□□ 2.08
PCF11O94913 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC28.07■■■□□ 2.08
PCF11O94913 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC28.07■■■□□ 2.08
PCF11O94913 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC28.07■■■□□ 2.08
PCF11O94913 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC28.07■■■□□ 2.08
PCF11O94913 MTDHP4-201ENST00000600287 670 ntBASIC28.07■■■□□ 2.08
PCF11O94913 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
PCF11O94913 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC28.07■■■□□ 2.08
PCF11O94913 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
PCF11O94913 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
PCF11O94913 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
PCF11O94913 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
PCF11O94913 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC28.07■■■□□ 2.08
PCF11O94913 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC28.07■■■□□ 2.08
PCF11O94913 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC28.07■■■□□ 2.08
PCF11O94913 AC116407.3-201ENST00000623905 1129 ntBASIC28.07■■■□□ 2.08
PCF11O94913 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC28.07■■■□□ 2.08
PCF11O94913 AP000867.4-201ENST00000641616 219 ntBASIC28.07■■■□□ 2.08
PCF11O94913 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
PCF11O94913 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCF11O94913 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC28.06■■■□□ 2.08
PCF11O94913 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCF11O94913 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCF11O94913 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCF11O94913 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.08
PCF11O94913 AC148477.5-201ENST00000625164 1645 ntBASIC28.06■■■□□ 2.08
PCF11O94913 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC28.06■■■□□ 2.08
PCF11O94913 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCF11O94913 PMPCAP1-201ENST00000508114 1576 ntBASIC28.06■■■□□ 2.08
PCF11O94913 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCF11O94913 AP002414.3-201ENST00000589352 1468 ntBASIC28.06■■■□□ 2.08
PCF11O94913 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC28.06■■■□□ 2.08
PCF11O94913 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC28.06■■■□□ 2.08
PCF11O94913 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCF11O94913 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCF11O94913 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC28.06■■■□□ 2.08
PCF11O94913 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC28.06■■■□□ 2.08
PCF11O94913 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
PCF11O94913 RPS29-206ENST00000557111 488 ntTSL 2 BASIC28.06■■■□□ 2.08
PCF11O94913 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC28.06■■■□□ 2.08
PCF11O94913 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
PCF11O94913 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
PCF11O94913 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC28.06■■■□□ 2.08
PCF11O94913 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCF11O94913 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
PCF11O94913 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PCF11O94913 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PCF11O94913 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
PCF11O94913 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
PCF11O94913 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC28.05■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms