Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.06■□□□□ 0.32
LDB3O75112 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.06■□□□□ 0.32
LDB3O75112 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.06■□□□□ 0.32
LDB3O75112 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.06■□□□□ 0.32
LDB3O75112 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.06■□□□□ 0.32
LDB3O75112 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.05■□□□□ 0.32
LDB3O75112 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LDB3O75112 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.05■□□□□ 0.32
LDB3O75112 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.05■□□□□ 0.32
LDB3O75112 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.05■□□□□ 0.32
LDB3O75112 PCED1CP-201ENST00000419887 785 ntBASIC17.05■□□□□ 0.32
LDB3O75112 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.05■□□□□ 0.32
LDB3O75112 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.05■□□□□ 0.32
LDB3O75112 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.05■□□□□ 0.32
LDB3O75112 AC005332.3-201ENST00000589904 676 ntBASIC17.05■□□□□ 0.32
LDB3O75112 AC004263.2-201ENST00000617183 678 ntBASIC17.05■□□□□ 0.32
LDB3O75112 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.05■□□□□ 0.32
LDB3O75112 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LDB3O75112 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.05■□□□□ 0.32
LDB3O75112 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LDB3O75112 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.05■□□□□ 0.32
LDB3O75112 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB3O75112 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LDB3O75112 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
LDB3O75112 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LDB3O75112 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.04■□□□□ 0.32
LDB3O75112 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
LDB3O75112 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
LDB3O75112 AC018470.1-201ENST00000624790 3129 ntBASIC17.04■□□□□ 0.32
LDB3O75112 AC093010.1-201ENST00000473625 1624 ntBASIC17.04■□□□□ 0.32
LDB3O75112 Z83836.1-201ENST00000624605 1642 ntBASIC17.04■□□□□ 0.32
LDB3O75112 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.04■□□□□ 0.32
LDB3O75112 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LDB3O75112 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
LDB3O75112 IGHGP-201ENST00000390555 1178 ntBASIC17.04■□□□□ 0.32
LDB3O75112 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.04■□□□□ 0.32
LDB3O75112 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.04■□□□□ 0.32
LDB3O75112 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.04■□□□□ 0.32
LDB3O75112 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.04■□□□□ 0.32
LDB3O75112 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.04■□□□□ 0.32
LDB3O75112 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.04■□□□□ 0.32
LDB3O75112 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.04■□□□□ 0.32
LDB3O75112 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.04■□□□□ 0.32
LDB3O75112 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
LDB3O75112 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.04■□□□□ 0.32
LDB3O75112 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.04■□□□□ 0.32
LDB3O75112 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.04■□□□□ 0.32
LDB3O75112 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB3O75112 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms