Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.87■□□□□ 0.29
PRKNO60260 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.87■□□□□ 0.29
PRKNO60260 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.87■□□□□ 0.29
PRKNO60260 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.87■□□□□ 0.29
PRKNO60260 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.87■□□□□ 0.29
PRKNO60260 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.87■□□□□ 0.29
PRKNO60260 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
PRKNO60260 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PRKNO60260 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PRKNO60260 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
PRKNO60260 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PRKNO60260 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PRKNO60260 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PRKNO60260 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PRKNO60260 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 AC093677.2-201ENST00000600169 1863 ntBASIC16.86■□□□□ 0.29
PRKNO60260 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 LINC00602-201ENST00000629776 2065 ntBASIC16.86■□□□□ 0.29
PRKNO60260 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.86■□□□□ 0.29
PRKNO60260 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.86■□□□□ 0.29
PRKNO60260 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.86■□□□□ 0.29
PRKNO60260 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.86■□□□□ 0.29
PRKNO60260 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.86■□□□□ 0.29
PRKNO60260 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.86■□□□□ 0.29
PRKNO60260 MIR3180-1-201ENST00000580374 94 ntBASIC16.86■□□□□ 0.29
PRKNO60260 MIR3180-3-201ENST00000584616 94 ntBASIC16.86■□□□□ 0.29
PRKNO60260 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.86■□□□□ 0.29
PRKNO60260 REXO1L9P-201ENST00000604264 2108 ntBASIC16.86■□□□□ 0.29
PRKNO60260 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
PRKNO60260 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.86■□□□□ 0.29
PRKNO60260 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 AL353692.3-201ENST00000407031 1396 ntBASIC16.86■□□□□ 0.29
PRKNO60260 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PRKNO60260 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.85■□□□□ 0.29
PRKNO60260 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
PRKNO60260 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.85■□□□□ 0.29
PRKNO60260 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.85■□□□□ 0.29
PRKNO60260 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PRKNO60260 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 CHCHD2P8-201ENST00000429873 447 ntBASIC16.85■□□□□ 0.29
PRKNO60260 HCG4P8-203ENST00000443049 980 ntBASIC16.85■□□□□ 0.29
PRKNO60260 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.85■□□□□ 0.29
PRKNO60260 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.85■□□□□ 0.29
PRKNO60260 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.85■□□□□ 0.29
PRKNO60260 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
PRKNO60260 AP002414.4-201ENST00000589764 1148 ntBASIC16.85■□□□□ 0.29
PRKNO60260 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.85■□□□□ 0.29
PRKNO60260 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.85■□□□□ 0.29
PRKNO60260 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PRKNO60260 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.85■□□□□ 0.29
PRKNO60260 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKNO60260 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.85■□□□□ 0.29
PRKNO60260 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
PRKNO60260 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.84■□□□□ 0.29
PRKNO60260 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.84■□□□□ 0.29
PRKNO60260 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
PRKNO60260 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PRKNO60260 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PRKNO60260 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.84■□□□□ 0.29
PRKNO60260 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms