Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.8■□□□□ 0.76
CLDN3O15551 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.79■□□□□ 0.76
CLDN3O15551 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.79■□□□□ 0.76
CLDN3O15551 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN3O15551 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CLDN3O15551 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.79■□□□□ 0.76
CLDN3O15551 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN3O15551 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN3O15551 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN3O15551 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN3O15551 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN3O15551 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.79■□□□□ 0.76
CLDN3O15551 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
CLDN3O15551 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
CLDN3O15551 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.79■□□□□ 0.76
CLDN3O15551 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN3O15551 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN3O15551 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.79■□□□□ 0.76
CLDN3O15551 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN3O15551 AC135776.1-201ENST00000319817 2481 ntBASIC19.79■□□□□ 0.76
CLDN3O15551 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
CLDN3O15551 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CLDN3O15551 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN3O15551 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.79■□□□□ 0.76
CLDN3O15551 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN3O15551 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CLDN3O15551 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CLDN3O15551 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 AC093677.2-201ENST00000600169 1863 ntBASIC19.78■□□□□ 0.76
CLDN3O15551 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CLDN3O15551 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.78■□□□□ 0.76
CLDN3O15551 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.78■□□□□ 0.76
CLDN3O15551 AP002383.4-201ENST00000442518 975 ntBASIC19.78■□□□□ 0.76
CLDN3O15551 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.78■□□□□ 0.76
CLDN3O15551 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.78■□□□□ 0.76
CLDN3O15551 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CLDN3O15551 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.78■□□□□ 0.76
CLDN3O15551 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.78■□□□□ 0.76
CLDN3O15551 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.78■□□□□ 0.76
CLDN3O15551 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CLDN3O15551 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CLDN3O15551 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
CLDN3O15551 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.78■□□□□ 0.76
CLDN3O15551 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN3O15551 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CLDN3O15551 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.77■□□□□ 0.76
CLDN3O15551 KRT18P1-202ENST00000452408 1331 ntBASIC19.77■□□□□ 0.76
CLDN3O15551 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN3O15551 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN3O15551 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN3O15551 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN3O15551 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CLDN3O15551 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.77■□□□□ 0.76
CLDN3O15551 TSPY12P-201ENST00000421279 868 ntBASIC19.77■□□□□ 0.76
CLDN3O15551 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN3O15551 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.77■□□□□ 0.76
CLDN3O15551 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN3O15551 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN3O15551 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.77■□□□□ 0.76
CLDN3O15551 AP002414.4-201ENST00000589764 1148 ntBASIC19.77■□□□□ 0.76
CLDN3O15551 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.77■□□□□ 0.76
CLDN3O15551 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.77■□□□□ 0.76
CLDN3O15551 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN3O15551 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN3O15551 AL390961.4-201ENST00000623958 2535 ntBASIC19.77■□□□□ 0.76
CLDN3O15551 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.77■□□□□ 0.75
CLDN3O15551 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CLDN3O15551 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
CLDN3O15551 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CLDN3O15551 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.76■□□□□ 0.75
CLDN3O15551 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms