Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXN3O00409 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.42■□□□□ 0.7
FOXN3O00409 YBX1P2-201ENST00000489612 999 ntBASIC19.42■□□□□ 0.7
FOXN3O00409 DUTP2-201ENST00000519164 463 ntBASIC19.42■□□□□ 0.7
FOXN3O00409 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.42■□□□□ 0.7
FOXN3O00409 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.42■□□□□ 0.7
FOXN3O00409 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
FOXN3O00409 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.42■□□□□ 0.7
FOXN3O00409 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
FOXN3O00409 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXN3O00409 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
FOXN3O00409 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
FOXN3O00409 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
FOXN3O00409 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
FOXN3O00409 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXN3O00409 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.42■□□□□ 0.7
FOXN3O00409 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXN3O00409 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXN3O00409 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXN3O00409 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
FOXN3O00409 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXN3O00409 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
FOXN3O00409 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.42■□□□□ 0.7
FOXN3O00409 GNAS-203ENST00000306120 1878 ntBASIC19.41■□□□□ 0.7
FOXN3O00409 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
FOXN3O00409 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
FOXN3O00409 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 AC117947.1-201ENST00000427448 529 ntBASIC19.41■□□□□ 0.7
FOXN3O00409 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.41■□□□□ 0.7
FOXN3O00409 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.41■□□□□ 0.7
FOXN3O00409 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.41■□□□□ 0.7
FOXN3O00409 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.41■□□□□ 0.7
FOXN3O00409 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.41■□□□□ 0.7
FOXN3O00409 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.41■□□□□ 0.7
FOXN3O00409 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
FOXN3O00409 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
FOXN3O00409 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
FOXN3O00409 LINC00167-201ENST00000530583 1419 ntBASIC19.41■□□□□ 0.7
FOXN3O00409 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 AL391807.1-203ENST00000604392 2365 ntBASIC19.41■□□□□ 0.7
FOXN3O00409 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
FOXN3O00409 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.41■□□□□ 0.7
FOXN3O00409 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.41■□□□□ 0.7
FOXN3O00409 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
FOXN3O00409 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
FOXN3O00409 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
FOXN3O00409 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.4■□□□□ 0.7
FOXN3O00409 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.4■□□□□ 0.7
FOXN3O00409 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.4■□□□□ 0.7
FOXN3O00409 SPDYE15P-201ENST00000424157 909 ntBASIC19.4■□□□□ 0.7
FOXN3O00409 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.4■□□□□ 0.7
FOXN3O00409 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.4■□□□□ 0.7
FOXN3O00409 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.4■□□□□ 0.7
FOXN3O00409 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.4■□□□□ 0.7
FOXN3O00409 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.4■□□□□ 0.7
FOXN3O00409 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
FOXN3O00409 LINC00602-201ENST00000629776 2065 ntBASIC19.4■□□□□ 0.7
FOXN3O00409 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.4■□□□□ 0.7
FOXN3O00409 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
FOXN3O00409 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 AC006116.8-202ENST00000587620 1550 ntBASIC19.4■□□□□ 0.7
FOXN3O00409 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
FOXN3O00409 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
FOXN3O00409 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.7
FOXN3O00409 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
FOXN3O00409 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
FOXN3O00409 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.39■□□□□ 0.7
FOXN3O00409 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
FOXN3O00409 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
FOXN3O00409 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
FOXN3O00409 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.39■□□□□ 0.69
FOXN3O00409 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms