Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.2■□□□□ 0.34
UPK1AO00322 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.2■□□□□ 0.34
UPK1AO00322 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.2■□□□□ 0.34
UPK1AO00322 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
UPK1AO00322 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.2■□□□□ 0.34
UPK1AO00322 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.2■□□□□ 0.34
UPK1AO00322 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.2■□□□□ 0.34
UPK1AO00322 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
UPK1AO00322 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
UPK1AO00322 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.2■□□□□ 0.34
UPK1AO00322 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.2■□□□□ 0.34
UPK1AO00322 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.2■□□□□ 0.34
UPK1AO00322 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
UPK1AO00322 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.19■□□□□ 0.34
UPK1AO00322 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
UPK1AO00322 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.19■□□□□ 0.34
UPK1AO00322 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.19■□□□□ 0.34
UPK1AO00322 ECEL1P3-201ENST00000427961 737 ntBASIC17.19■□□□□ 0.34
UPK1AO00322 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.19■□□□□ 0.34
UPK1AO00322 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.19■□□□□ 0.34
UPK1AO00322 NEK4P2-201ENST00000580004 1012 ntBASIC17.19■□□□□ 0.34
UPK1AO00322 AC012306.2-201ENST00000609350 630 ntBASIC17.19■□□□□ 0.34
UPK1AO00322 AC133561.5-201ENST00000635547 218 ntBASIC17.19■□□□□ 0.34
UPK1AO00322 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.19■□□□□ 0.34
UPK1AO00322 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
UPK1AO00322 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
UPK1AO00322 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
UPK1AO00322 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.19■□□□□ 0.34
UPK1AO00322 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 AC141586.5-201ENST00000624546 2050 ntBASIC17.19■□□□□ 0.34
UPK1AO00322 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
UPK1AO00322 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UPK1AO00322 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
UPK1AO00322 AC084018.2-201ENST00000613093 2607 ntBASIC17.18■□□□□ 0.34
UPK1AO00322 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.18■□□□□ 0.34
UPK1AO00322 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.18■□□□□ 0.34
UPK1AO00322 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.18■□□□□ 0.34
UPK1AO00322 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.18■□□□□ 0.34
UPK1AO00322 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.18■□□□□ 0.34
UPK1AO00322 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.18■□□□□ 0.34
UPK1AO00322 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.18■□□□□ 0.34
UPK1AO00322 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 SLC25A3P1-201ENST00000443844 931 ntBASIC17.18■□□□□ 0.34
UPK1AO00322 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 SEC1P-202ENST00000473944 940 ntBASIC17.18■□□□□ 0.34
UPK1AO00322 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.18■□□□□ 0.34
UPK1AO00322 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.18■□□□□ 0.34
UPK1AO00322 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.18■□□□□ 0.34
UPK1AO00322 MIR3180-4-201ENST00000582223 153 ntBASIC17.18■□□□□ 0.34
UPK1AO00322 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.18■□□□□ 0.34
UPK1AO00322 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 AC024243.1-201ENST00000609234 778 ntBASIC17.18■□□□□ 0.34
UPK1AO00322 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
UPK1AO00322 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
UPK1AO00322 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
UPK1AO00322 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms