Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC012306.2-201ENST00000609350 630 ntBASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS9D1Q9Y2B5 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 BX664615.1-201ENST00000443558 458 ntBASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 GCSHP2-201ENST00000560971 527 ntBASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 AL157888.1-201ENST00000631930 593 ntBASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS9D1Q9Y2B5 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 AC008764.6-201ENST00000595909 2069 ntBASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS9D1Q9Y2B5 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms