Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC100803.2-201ENST00000562459 1963 ntBASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 AL355312.1-201ENST00000407115 2176 ntBASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMA1Q9UHB6 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 TSPY7P-201ENST00000431358 1114 ntBASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
LIMA1Q9UHB6 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 TSPY14P-201ENST00000303979 915 ntBASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 INGX-201ENST00000359239 846 ntBASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 MIR4785-201ENST00000585005 73 ntBASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMA1Q9UHB6 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 MIR1238-201ENST00000408483 83 ntBASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMA1Q9UHB6 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms