Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 AC073648.2-201ENST00000510116 352 ntBASIC21.34■■□□□ 1.01
DDX4Q9NQI0 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
DDX4Q9NQI0 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 AC007967.3-201ENST00000434308 558 ntBASIC21.33■■□□□ 1.01
DDX4Q9NQI0 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 SCARNA2-201ENST00000458748 420 ntBASIC21.33■■□□□ 1.01
DDX4Q9NQI0 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX4Q9NQI0 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
DDX4Q9NQI0 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.33■■□□□ 1
DDX4Q9NQI0 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC21.33■■□□□ 1
DDX4Q9NQI0 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.33■■□□□ 1
DDX4Q9NQI0 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
DDX4Q9NQI0 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
DDX4Q9NQI0 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.32■■□□□ 1
DDX4Q9NQI0 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
DDX4Q9NQI0 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 RPL18-209ENST00000550645 463 ntTSL 5 BASIC21.32■■□□□ 1
DDX4Q9NQI0 RPL18-214ENST00000552588 559 ntTSL 3 BASIC21.32■■□□□ 1
DDX4Q9NQI0 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC21.32■■□□□ 1
DDX4Q9NQI0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21.32■■□□□ 1
DDX4Q9NQI0 AC139887.3-201ENST00000568585 713 ntBASIC21.32■■□□□ 1
DDX4Q9NQI0 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC21.32■■□□□ 1
DDX4Q9NQI0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC21.32■■□□□ 1
DDX4Q9NQI0 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC21.32■■□□□ 1
DDX4Q9NQI0 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC21.32■■□□□ 1
DDX4Q9NQI0 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
DDX4Q9NQI0 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC21.32■■□□□ 1
DDX4Q9NQI0 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX4Q9NQI0 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
DDX4Q9NQI0 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
DDX4Q9NQI0 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.31■■□□□ 1
DDX4Q9NQI0 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.31■■□□□ 1
DDX4Q9NQI0 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
DDX4Q9NQI0 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
DDX4Q9NQI0 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
DDX4Q9NQI0 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
DDX4Q9NQI0 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 AC093010.1-201ENST00000473625 1624 ntBASIC21.31■■□□□ 1
DDX4Q9NQI0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC21.31■■□□□ 1
DDX4Q9NQI0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC21.31■■□□□ 1
DDX4Q9NQI0 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms