Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC141257.4-201ENST00000634557 245 ntBASIC18.77■□□□□ 0.6
PCDH9Q9HC56 AC136944.6-201ENST00000634818 245 ntBASIC18.77■□□□□ 0.6
PCDH9Q9HC56 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.77■□□□□ 0.59
PCDH9Q9HC56 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
PCDH9Q9HC56 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PCDH9Q9HC56 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PCDH9Q9HC56 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
PCDH9Q9HC56 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.76■□□□□ 0.59
PCDH9Q9HC56 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.76■□□□□ 0.59
PCDH9Q9HC56 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 AC073508.3-201ENST00000619697 1419 ntBASIC18.75■□□□□ 0.59
PCDH9Q9HC56 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 NEK4P2-201ENST00000580004 1012 ntBASIC18.75■□□□□ 0.59
PCDH9Q9HC56 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.75■□□□□ 0.59
PCDH9Q9HC56 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
PCDH9Q9HC56 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 AC006116.8-202ENST00000587620 1550 ntBASIC18.74■□□□□ 0.59
PCDH9Q9HC56 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 AC009065.1-201ENST00000564055 1225 ntBASIC18.74■□□□□ 0.59
PCDH9Q9HC56 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 AC112497.1-201ENST00000624824 639 ntBASIC18.74■□□□□ 0.59
PCDH9Q9HC56 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms