Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDCA3Q99618 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDCA3Q99618 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDCA3Q99618 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CDCA3Q99618 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDCA3Q99618 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.81■□□□□ 0.6
CDCA3Q99618 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDCA3Q99618 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.81■□□□□ 0.6
CDCA3Q99618 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.81■□□□□ 0.6
CDCA3Q99618 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDCA3Q99618 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.81■□□□□ 0.6
CDCA3Q99618 SNHG9-202ENST00000564014 471 ntBASIC18.81■□□□□ 0.6
CDCA3Q99618 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CDCA3Q99618 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CDCA3Q99618 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.81■□□□□ 0.6
CDCA3Q99618 AL589182.2-201ENST00000619332 1049 ntBASIC18.81■□□□□ 0.6
CDCA3Q99618 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CDCA3Q99618 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDCA3Q99618 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDCA3Q99618 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.81■□□□□ 0.6
CDCA3Q99618 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDCA3Q99618 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDCA3Q99618 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.8■□□□□ 0.6
CDCA3Q99618 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDCA3Q99618 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.8■□□□□ 0.6
CDCA3Q99618 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.8■□□□□ 0.6
CDCA3Q99618 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDCA3Q99618 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDCA3Q99618 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDCA3Q99618 SPDYE21P-201ENST00000413323 827 ntBASIC18.8■□□□□ 0.6
CDCA3Q99618 AC254562.1-201ENST00000417586 456 ntBASIC18.8■□□□□ 0.6
CDCA3Q99618 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.8■□□□□ 0.6
CDCA3Q99618 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.8■□□□□ 0.6
CDCA3Q99618 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDCA3Q99618 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.8■□□□□ 0.6
CDCA3Q99618 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.8■□□□□ 0.6
CDCA3Q99618 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.8■□□□□ 0.6
CDCA3Q99618 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDCA3Q99618 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CDCA3Q99618 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDCA3Q99618 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.8■□□□□ 0.6
CDCA3Q99618 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDCA3Q99618 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDCA3Q99618 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDCA3Q99618 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDCA3Q99618 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDCA3Q99618 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CDCA3Q99618 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.79■□□□□ 0.6
CDCA3Q99618 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.79■□□□□ 0.6
CDCA3Q99618 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.79■□□□□ 0.6
CDCA3Q99618 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.79■□□□□ 0.6
CDCA3Q99618 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
CDCA3Q99618 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.79■□□□□ 0.6
CDCA3Q99618 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CDCA3Q99618 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
CDCA3Q99618 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CDCA3Q99618 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 AC103564.2-201ENST00000432853 1299 ntBASIC18.79■□□□□ 0.6
CDCA3Q99618 METTL21AP1-201ENST00000438852 635 ntBASIC18.79■□□□□ 0.6
CDCA3Q99618 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.79■□□□□ 0.6
CDCA3Q99618 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.79■□□□□ 0.6
CDCA3Q99618 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CDCA3Q99618 AL596442.2-201ENST00000610240 980 ntBASIC18.79■□□□□ 0.6
CDCA3Q99618 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.79■□□□□ 0.6
CDCA3Q99618 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.79■□□□□ 0.6
CDCA3Q99618 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.79■□□□□ 0.6
CDCA3Q99618 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDCA3Q99618 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CDCA3Q99618 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDCA3Q99618 AC093484.2-201ENST00000580996 2166 ntBASIC18.78■□□□□ 0.6
CDCA3Q99618 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.78■□□□□ 0.6
CDCA3Q99618 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.78■□□□□ 0.6
CDCA3Q99618 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDCA3Q99618 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDCA3Q99618 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDCA3Q99618 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDCA3Q99618 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.78■□□□□ 0.6
CDCA3Q99618 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDCA3Q99618 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.78■□□□□ 0.6
CDCA3Q99618 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.78■□□□□ 0.6
CDCA3Q99618 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CDCA3Q99618 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDCA3Q99618 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
CDCA3Q99618 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDCA3Q99618 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDCA3Q99618 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.78■□□□□ 0.6
CDCA3Q99618 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.78■□□□□ 0.6
CDCA3Q99618 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDCA3Q99618 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms