Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 KRT89P-201ENST00000620027 1478 ntBASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.12■□□□□ 0.33
PTCHD1Q96NR3 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 LINC01126-201ENST00000623515 1646 ntBASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 Z83836.1-201ENST00000624605 1642 ntBASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 TSPY22P-201ENST00000427496 604 ntBASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 BX276092.5-203ENST00000456199 560 ntBASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTCHD1Q96NR3 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 ESPNP-201ENST00000270691 2015 ntBASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 IGHGP-201ENST00000390555 1178 ntBASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 GPR32P1-201ENST00000601788 811 ntBASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 AL121672.3-201ENST00000608644 468 ntBASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 AC069148.1-201ENST00000608741 768 ntBASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 AC093458.2-201ENST00000623150 629 ntBASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms