Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 DUSP5P1-201ENST00000441325 1139 ntBASIC18.63■□□□□ 0.57
SKA1Q96BD8 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 BCL2-203ENST00000589955 5011 ntBASIC18.63■□□□□ 0.57
SKA1Q96BD8 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.62■□□□□ 0.57
SKA1Q96BD8 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SKA1Q96BD8 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SKA1Q96BD8 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SKA1Q96BD8 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
SKA1Q96BD8 AL023284.2-201ENST00000405850 579 ntBASIC18.62■□□□□ 0.57
SKA1Q96BD8 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.62■□□□□ 0.57
SKA1Q96BD8 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SKA1Q96BD8 AC024243.1-201ENST00000609234 778 ntBASIC18.62■□□□□ 0.57
SKA1Q96BD8 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.62■□□□□ 0.57
SKA1Q96BD8 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.62■□□□□ 0.57
SKA1Q96BD8 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 GPAT2P1-201ENST00000444924 1672 ntBASIC18.62■□□□□ 0.57
SKA1Q96BD8 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 AC126763.1-201ENST00000552015 2118 ntBASIC18.62■□□□□ 0.57
SKA1Q96BD8 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.62■□□□□ 0.57
SKA1Q96BD8 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA1Q96BD8 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 KRT8P3-201ENST00000519669 1449 ntBASIC18.61■□□□□ 0.57
SKA1Q96BD8 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 BX276092.5-203ENST00000456199 560 ntBASIC18.61■□□□□ 0.57
SKA1Q96BD8 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.61■□□□□ 0.57
SKA1Q96BD8 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SKA1Q96BD8 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SKA1Q96BD8 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms