Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC23.63■■□□□ 1.37
RTF1Q92541 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RTF1Q92541 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RTF1Q92541 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC23.63■■□□□ 1.37
RTF1Q92541 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RTF1Q92541 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RTF1Q92541 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RTF1Q92541 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC23.62■■□□□ 1.37
RTF1Q92541 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC23.62■■□□□ 1.37
RTF1Q92541 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 AC096582.2-201ENST00000510860 516 ntBASIC23.62■■□□□ 1.37
RTF1Q92541 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC23.62■■□□□ 1.37
RTF1Q92541 AC005336.2-201ENST00000593183 939 ntBASIC23.62■■□□□ 1.37
RTF1Q92541 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
RTF1Q92541 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC23.62■■□□□ 1.37
RTF1Q92541 WIZP1-201ENST00000531444 2299 ntBASIC23.62■■□□□ 1.37
RTF1Q92541 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC23.62■■□□□ 1.37
RTF1Q92541 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC23.62■■□□□ 1.37
RTF1Q92541 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTF1Q92541 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
RTF1Q92541 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
RTF1Q92541 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
RTF1Q92541 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
RTF1Q92541 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC23.61■■□□□ 1.37
RTF1Q92541 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RTF1Q92541 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RTF1Q92541 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RTF1Q92541 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC23.61■■□□□ 1.37
RTF1Q92541 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC23.61■■□□□ 1.37
RTF1Q92541 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RTF1Q92541 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
RTF1Q92541 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC23.61■■□□□ 1.37
RTF1Q92541 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RTF1Q92541 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC23.61■■□□□ 1.37
RTF1Q92541 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC23.61■■□□□ 1.37
RTF1Q92541 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC23.61■■□□□ 1.37
RTF1Q92541 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RTF1Q92541 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
RTF1Q92541 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC23.61■■□□□ 1.37
RTF1Q92541 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
RTF1Q92541 AC093503.3-201ENST00000624917 2352 ntBASIC23.6■■□□□ 1.37
RTF1Q92541 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC23.6■■□□□ 1.37
RTF1Q92541 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
RTF1Q92541 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC23.6■■□□□ 1.37
RTF1Q92541 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
RTF1Q92541 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RTF1Q92541 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC23.6■■□□□ 1.37
RTF1Q92541 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC23.6■■□□□ 1.37
RTF1Q92541 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC23.6■■□□□ 1.37
RTF1Q92541 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
RTF1Q92541 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC23.6■■□□□ 1.37
RTF1Q92541 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
RTF1Q92541 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC23.6■■□□□ 1.37
RTF1Q92541 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
RTF1Q92541 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
RTF1Q92541 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RTF1Q92541 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC23.59■■□□□ 1.37
RTF1Q92541 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
RTF1Q92541 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC23.59■■□□□ 1.37
RTF1Q92541 TNXA-203ENST00000507684 2038 ntBASIC23.59■■□□□ 1.37
RTF1Q92541 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC23.59■■□□□ 1.37
RTF1Q92541 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RTF1Q92541 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RTF1Q92541 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RTF1Q92541 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC23.59■■□□□ 1.37
RTF1Q92541 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC23.59■■□□□ 1.37
RTF1Q92541 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RTF1Q92541 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC23.59■■□□□ 1.37
RTF1Q92541 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
RTF1Q92541 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC23.59■■□□□ 1.37
RTF1Q92541 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RTF1Q92541 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RTF1Q92541 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
RTF1Q92541 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC23.59■■□□□ 1.37
RTF1Q92541 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RTF1Q92541 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
RTF1Q92541 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RTF1Q92541 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RTF1Q92541 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
RTF1Q92541 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC23.58■■□□□ 1.37
RTF1Q92541 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
RTF1Q92541 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RTF1Q92541 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC23.58■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms