Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 RCN1P1-201ENST00000400413 996 ntBASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 AC104076.2-201ENST00000448912 469 ntBASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 AC024563.2-201ENST00000603282 481 ntBASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC65Q8IXS2 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
CCDC65Q8IXS2 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 FAM8A6P-201ENST00000407496 1135 ntBASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 RN7SL850P-201ENST00000579959 291 ntBASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 NOC2LP2-201ENST00000407594 1944 ntBASIC20.14■□□□□ 0.81
CCDC65Q8IXS2 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 HLA-F-220ENST00000434407 884 ntBASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 AC092647.4-201ENST00000457211 535 ntBASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC65Q8IXS2 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms