Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRIF1Q5T3J3 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRIF1Q5T3J3 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 AC098590.1-201ENST00000468126 897 ntBASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LRIF1Q5T3J3 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRIF1Q5T3J3 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 AC132938.6-201ENST00000623828 1655 ntBASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 GCSHP5-201ENST00000443090 522 ntBASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LRIF1Q5T3J3 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms