Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 AC004980.1-204ENST00000429707 299 ntBASIC16.27■□□□□ 0.2
CCDC58Q4VC31 AC008403.3-201ENST00000598924 454 ntBASIC16.27■□□□□ 0.2
CCDC58Q4VC31 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.27■□□□□ 0.19
CCDC58Q4VC31 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 GMCL1P1-201ENST00000463439 1581 ntBASIC16.26■□□□□ 0.19
CCDC58Q4VC31 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 AC069544.1-201ENST00000609399 999 ntBASIC16.26■□□□□ 0.19
CCDC58Q4VC31 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CCDC58Q4VC31 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 AD000864.1-201ENST00000624076 2295 ntBASIC16.25■□□□□ 0.19
CCDC58Q4VC31 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 NIFKP9-201ENST00000419265 221 ntBASIC16.25■□□□□ 0.19
CCDC58Q4VC31 AC091390.4-202ENST00000476426 537 ntBASIC16.25■□□□□ 0.19
CCDC58Q4VC31 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 AC142086.2-201ENST00000569753 217 ntBASIC16.25■□□□□ 0.19
CCDC58Q4VC31 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 AL096828.2-201ENST00000567259 1965 ntBASIC16.25■□□□□ 0.19
CCDC58Q4VC31 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC58Q4VC31 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms