Protein–RNA interactions for Protein: Q29RF7

PDS5A, Sister chromatid cohesion protein PDS5 homolog A, humanhuman

Known RBP Predictions only

Length 1,337 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDS5AQ29RF7 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDS5AQ29RF7 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDS5AQ29RF7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDS5AQ29RF7 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDS5AQ29RF7 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PDS5AQ29RF7 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDS5AQ29RF7 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 AC093677.2-201ENST00000600169 1863 ntBASIC21.68■■□□□ 1.06
PDS5AQ29RF7 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 AC007967.3-201ENST00000434308 558 ntBASIC21.68■■□□□ 1.06
PDS5AQ29RF7 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 RNA5SP419-201ENST00000515908 135 ntBASIC21.68■■□□□ 1.06
PDS5AQ29RF7 IRF8-202ENST00000562492 946 ntTSL 3 BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDS5AQ29RF7 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 CD9-202ENST00000382515 1229 ntTSL 5 BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 FAM220CP-201ENST00000395253 831 ntBASIC21.67■■□□□ 1.06
PDS5AQ29RF7 ABCD1P5-201ENST00000445663 754 ntBASIC21.67■■□□□ 1.06
PDS5AQ29RF7 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 AC022898.2-201ENST00000616822 1312 ntBASIC21.67■■□□□ 1.06
PDS5AQ29RF7 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
PDS5AQ29RF7 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 AC064862.7-201ENST00000604520 867 ntBASIC21.66■■□□□ 1.06
PDS5AQ29RF7 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 HLA-A-201ENST00000376802 1334 ntBASIC21.66■■□□□ 1.06
PDS5AQ29RF7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.66■■□□□ 1.06
PDS5AQ29RF7 AC093503.3-201ENST00000624917 2352 ntBASIC21.66■■□□□ 1.06
PDS5AQ29RF7 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 AP005117.1-201ENST00000584346 1413 ntBASIC21.65■■□□□ 1.06
PDS5AQ29RF7 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.65■■□□□ 1.06
PDS5AQ29RF7 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 KRT18P67-201ENST00000432816 1264 ntBASIC21.65■■□□□ 1.06
PDS5AQ29RF7 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 AC018712.1-201ENST00000455767 687 ntBASIC21.65■■□□□ 1.06
PDS5AQ29RF7 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 AC122714.2-201ENST00000502787 707 ntBASIC21.65■■□□□ 1.06
PDS5AQ29RF7 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.65■■□□□ 1.06
PDS5AQ29RF7 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms