Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
FOXA1P55317 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 AC108860.2-201ENST00000562760 2183 ntBASIC17.59■□□□□ 0.41
FOXA1P55317 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.59■□□□□ 0.41
FOXA1P55317 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.58■□□□□ 0.41
FOXA1P55317 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
FOXA1P55317 AC132938.6-201ENST00000623828 1655 ntBASIC17.58■□□□□ 0.41
FOXA1P55317 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
FOXA1P55317 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
FOXA1P55317 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.58■□□□□ 0.41
FOXA1P55317 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.58■□□□□ 0.41
FOXA1P55317 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
FOXA1P55317 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
FOXA1P55317 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
FOXA1P55317 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
FOXA1P55317 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 TSPY14P-201ENST00000303979 915 ntBASIC17.58■□□□□ 0.4
FOXA1P55317 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.58■□□□□ 0.4
FOXA1P55317 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.58■□□□□ 0.4
FOXA1P55317 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.58■□□□□ 0.4
FOXA1P55317 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.58■□□□□ 0.4
FOXA1P55317 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.58■□□□□ 0.4
FOXA1P55317 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.58■□□□□ 0.4
FOXA1P55317 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 C2orf69P3-201ENST00000565542 1120 ntBASIC17.58■□□□□ 0.4
FOXA1P55317 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 AC010240.3-201ENST00000607688 395 ntBASIC17.58■□□□□ 0.4
FOXA1P55317 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.58■□□□□ 0.4
FOXA1P55317 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.58■□□□□ 0.4
FOXA1P55317 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
FOXA1P55317 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.58■□□□□ 0.4
FOXA1P55317 AC100803.2-201ENST00000562459 1963 ntBASIC17.58■□□□□ 0.4
FOXA1P55317 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
FOXA1P55317 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.58■□□□□ 0.4
FOXA1P55317 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA1P55317 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXA1P55317 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXA1P55317 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
FOXA1P55317 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
FOXA1P55317 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
FOXA1P55317 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXA1P55317 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.57■□□□□ 0.4
FOXA1P55317 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXA1P55317 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.57■□□□□ 0.4
FOXA1P55317 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.57■□□□□ 0.4
FOXA1P55317 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.57■□□□□ 0.4
FOXA1P55317 MIR3180-4-201ENST00000582223 153 ntBASIC17.57■□□□□ 0.4
FOXA1P55317 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.57■□□□□ 0.4
FOXA1P55317 AC010653.2-201ENST00000623505 997 ntBASIC17.57■□□□□ 0.4
FOXA1P55317 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 AC141586.5-201ENST00000624546 2050 ntBASIC17.57■□□□□ 0.4
FOXA1P55317 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
FOXA1P55317 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA1P55317 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXA1P55317 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
FOXA1P55317 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXA1P55317 AC080080.1-201ENST00000625121 2420 ntBASIC17.56■□□□□ 0.4
FOXA1P55317 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXA1P55317 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 SEC1P-202ENST00000473944 940 ntBASIC17.56■□□□□ 0.4
FOXA1P55317 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXA1P55317 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
FOXA1P55317 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXA1P55317 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXA1P55317 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXA1P55317 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA1P55317 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms