Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
MSH6P52701 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH6P52701 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
MSH6P52701 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC25.02■■□□□ 1.6
MSH6P52701 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC25.02■■□□□ 1.6
MSH6P52701 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
MSH6P52701 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC25.02■■□□□ 1.6
MSH6P52701 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
MSH6P52701 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC25.02■■□□□ 1.6
MSH6P52701 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH6P52701 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
MSH6P52701 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH6P52701 CD99-202ENST00000381180 530 ntTSL 2 BASIC25.02■■□□□ 1.6
MSH6P52701 ELK2BP-201ENST00000415014 1224 ntBASIC25.02■■□□□ 1.6
MSH6P52701 VN2R19P-201ENST00000442399 1052 ntBASIC25.02■■□□□ 1.6
MSH6P52701 PRYP5-201ENST00000451909 266 ntBASIC25.02■■□□□ 1.6
MSH6P52701 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
MSH6P52701 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC25.02■■□□□ 1.6
MSH6P52701 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC25.02■■□□□ 1.6
MSH6P52701 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH6P52701 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH6P52701 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC25.02■■□□□ 1.6
MSH6P52701 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC25.02■■□□□ 1.6
MSH6P52701 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC25.01■■□□□ 1.59
MSH6P52701 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC25.01■■□□□ 1.59
MSH6P52701 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC25.01■■□□□ 1.59
MSH6P52701 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC25.01■■□□□ 1.59
MSH6P52701 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 AC112698.1-201ENST00000510299 916 ntBASIC25.01■■□□□ 1.59
MSH6P52701 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
MSH6P52701 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC25.01■■□□□ 1.59
MSH6P52701 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC25.01■■□□□ 1.59
MSH6P52701 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC25.01■■□□□ 1.59
MSH6P52701 AC138761.1-201ENST00000584393 385 ntBASIC25.01■■□□□ 1.59
MSH6P52701 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 SIGLEC16-201ENST00000599858 1437 ntBASIC25.01■■□□□ 1.59
MSH6P52701 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
MSH6P52701 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC25.01■■□□□ 1.59
MSH6P52701 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC25.01■■□□□ 1.59
MSH6P52701 SDHAP2-201ENST00000455183 2001 ntBASIC25.01■■□□□ 1.59
MSH6P52701 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
MSH6P52701 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
MSH6P52701 AC141586.3-201ENST00000562166 1838 ntBASIC25■■□□□ 1.59
MSH6P52701 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC25■■□□□ 1.59
MSH6P52701 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC25■■□□□ 1.59
MSH6P52701 PUDP-206ENST00000540122 825 ntTSL 2 BASIC25■■□□□ 1.59
MSH6P52701 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC25■■□□□ 1.59
MSH6P52701 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC25■■□□□ 1.59
MSH6P52701 LSM12-202ENST00000585388 942 ntTSL 3 BASIC25■■□□□ 1.59
MSH6P52701 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
MSH6P52701 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC25■■□□□ 1.59
MSH6P52701 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
MSH6P52701 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC25■■□□□ 1.59
MSH6P52701 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
MSH6P52701 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
MSH6P52701 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
MSH6P52701 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
MSH6P52701 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
MSH6P52701 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
MSH6P52701 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC24.99■■□□□ 1.59
MSH6P52701 AC007967.3-201ENST00000434308 558 ntBASIC24.99■■□□□ 1.59
MSH6P52701 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC24.99■■□□□ 1.59
MSH6P52701 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC24.99■■□□□ 1.59
MSH6P52701 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC24.99■■□□□ 1.59
MSH6P52701 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC24.99■■□□□ 1.59
MSH6P52701 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
MSH6P52701 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC24.99■■□□□ 1.59
MSH6P52701 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
MSH6P52701 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC24.98■■□□□ 1.59
MSH6P52701 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC24.98■■□□□ 1.59
MSH6P52701 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
MSH6P52701 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
MSH6P52701 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC24.98■■□□□ 1.59
MSH6P52701 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
MSH6P52701 AC004817.3-201ENST00000602957 2129 ntBASIC24.98■■□□□ 1.59
MSH6P52701 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
MSH6P52701 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
MSH6P52701 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC24.97■■□□□ 1.59
MSH6P52701 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC24.97■■□□□ 1.59
MSH6P52701 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC24.97■■□□□ 1.59
MSH6P52701 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC24.97■■□□□ 1.59
MSH6P52701 TAF8-206ENST00000472818 719 ntTSL 2 BASIC24.97■■□□□ 1.59
MSH6P52701 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
MSH6P52701 PDPK2P-202ENST00000562415 1191 ntBASIC24.97■■□□□ 1.59
MSH6P52701 AL589182.2-201ENST00000619332 1049 ntBASIC24.97■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms