Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
PTPN4P29074 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.26■□□□□ 0.51
PTPN4P29074 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PTPN4P29074 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
PTPN4P29074 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.26■□□□□ 0.51
PTPN4P29074 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN4P29074 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN4P29074 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.26■□□□□ 0.51
PTPN4P29074 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.26■□□□□ 0.51
PTPN4P29074 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PTPN4P29074 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
PTPN4P29074 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
PTPN4P29074 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PTPN4P29074 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.25■□□□□ 0.51
PTPN4P29074 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.25■□□□□ 0.51
PTPN4P29074 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 AC104076.2-201ENST00000448912 469 ntBASIC18.25■□□□□ 0.51
PTPN4P29074 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 AC008040.2-201ENST00000461049 708 ntBASIC18.25■□□□□ 0.51
PTPN4P29074 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.25■□□□□ 0.51
PTPN4P29074 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.25■□□□□ 0.51
PTPN4P29074 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.25■□□□□ 0.51
PTPN4P29074 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
PTPN4P29074 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PTPN4P29074 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.25■□□□□ 0.51
PTPN4P29074 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PTPN4P29074 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.25■□□□□ 0.51
PTPN4P29074 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN4P29074 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PTPN4P29074 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.24■□□□□ 0.51
PTPN4P29074 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PTPN4P29074 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.24■□□□□ 0.51
PTPN4P29074 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.24■□□□□ 0.51
PTPN4P29074 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.24■□□□□ 0.51
PTPN4P29074 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.24■□□□□ 0.51
PTPN4P29074 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.24■□□□□ 0.51
PTPN4P29074 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN4P29074 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.24■□□□□ 0.51
PTPN4P29074 AD000864.1-201ENST00000624076 2295 ntBASIC18.24■□□□□ 0.51
PTPN4P29074 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
PTPN4P29074 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PTPN4P29074 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.23■□□□□ 0.51
PTPN4P29074 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.23■□□□□ 0.51
PTPN4P29074 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.23■□□□□ 0.51
PTPN4P29074 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.23■□□□□ 0.51
PTPN4P29074 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.23■□□□□ 0.51
PTPN4P29074 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 AC096733.2-201ENST00000609937 1394 ntBASIC18.23■□□□□ 0.51
PTPN4P29074 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 MFAP1P1-201ENST00000442257 1255 ntBASIC18.23■□□□□ 0.51
PTPN4P29074 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.23■□□□□ 0.51
PTPN4P29074 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.23■□□□□ 0.51
PTPN4P29074 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.23■□□□□ 0.51
PTPN4P29074 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PTPN4P29074 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
PTPN4P29074 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN4P29074 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.22■□□□□ 0.51
PTPN4P29074 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN4P29074 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN4P29074 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
PTPN4P29074 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PTPN4P29074 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.22■□□□□ 0.51
PTPN4P29074 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
PTPN4P29074 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN4P29074 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN4P29074 INGX-201ENST00000359239 846 ntBASIC18.22■□□□□ 0.51
PTPN4P29074 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms