Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH3P22223 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH3P22223 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH3P22223 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH3P22223 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH3P22223 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CDH3P22223 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 NOC2LP2-201ENST00000407594 1944 ntBASIC17.8■□□□□ 0.44
CDH3P22223 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH3P22223 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CDH3P22223 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CDH3P22223 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.8■□□□□ 0.44
CDH3P22223 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH3P22223 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH3P22223 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH3P22223 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.8■□□□□ 0.44
CDH3P22223 AC009065.1-201ENST00000564055 1225 ntBASIC17.8■□□□□ 0.44
CDH3P22223 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH3P22223 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH3P22223 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH3P22223 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
CDH3P22223 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH3P22223 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH3P22223 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH3P22223 AC104581.1-202ENST00000635932 2618 ntBASIC17.8■□□□□ 0.44
CDH3P22223 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CDH3P22223 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH3P22223 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH3P22223 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
CDH3P22223 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CDH3P22223 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 MIR3180-4-201ENST00000582223 153 ntBASIC17.79■□□□□ 0.44
CDH3P22223 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH3P22223 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.79■□□□□ 0.44
CDH3P22223 AC116407.4-201ENST00000623319 1061 ntBASIC17.79■□□□□ 0.44
CDH3P22223 AC079602.3-201ENST00000623931 403 ntBASIC17.79■□□□□ 0.44
CDH3P22223 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.79■□□□□ 0.44
CDH3P22223 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.79■□□□□ 0.44
CDH3P22223 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH3P22223 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CDH3P22223 AL391807.1-203ENST00000604392 2365 ntBASIC17.79■□□□□ 0.44
CDH3P22223 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH3P22223 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.78■□□□□ 0.44
CDH3P22223 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 AP000593.1-201ENST00000393668 712 ntBASIC17.78■□□□□ 0.44
CDH3P22223 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.78■□□□□ 0.44
CDH3P22223 AL645929.1-201ENST00000420084 975 ntBASIC17.78■□□□□ 0.44
CDH3P22223 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.78■□□□□ 0.44
CDH3P22223 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.78■□□□□ 0.44
CDH3P22223 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.78■□□□□ 0.44
CDH3P22223 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
CDH3P22223 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.78■□□□□ 0.44
CDH3P22223 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.78■□□□□ 0.44
CDH3P22223 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CDH3P22223 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
CDH3P22223 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CDH3P22223 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CDH3P22223 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH3P22223 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CDH3P22223 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDH3P22223 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDH3P22223 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDH3P22223 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDH3P22223 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.77■□□□□ 0.44
CDH3P22223 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms