Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HLA-DOAP06340 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HLA-DOAP06340 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HLA-DOAP06340 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
HLA-DOAP06340 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
HLA-DOAP06340 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
HLA-DOAP06340 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.33■■□□□ 1.01
HLA-DOAP06340 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HLA-DOAP06340 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC21.33■■□□□ 1.01
HLA-DOAP06340 AC079776.4-201ENST00000511039 504 ntBASIC21.33■■□□□ 1.01
HLA-DOAP06340 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HLA-DOAP06340 GZMM-202ENST00000592501 941 ntTSL 3 BASIC21.33■■□□□ 1.01
HLA-DOAP06340 AC011467.2-201ENST00000598425 242 ntBASIC21.33■■□□□ 1.01
HLA-DOAP06340 AC008608.2-201ENST00000606089 416 ntBASIC21.33■■□□□ 1.01
HLA-DOAP06340 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC21.33■■□□□ 1.01
HLA-DOAP06340 TP73-AS1-207ENST00000624167 988 ntBASIC21.33■■□□□ 1.01
HLA-DOAP06340 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC21.33■■□□□ 1
HLA-DOAP06340 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.33■■□□□ 1
HLA-DOAP06340 CROCCP3-202ENST00000420820 1947 ntBASIC21.33■■□□□ 1
HLA-DOAP06340 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.33■■□□□ 1
HLA-DOAP06340 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HLA-DOAP06340 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.33■■□□□ 1
HLA-DOAP06340 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HLA-DOAP06340 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HLA-DOAP06340 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
HLA-DOAP06340 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.32■■□□□ 1
HLA-DOAP06340 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.32■■□□□ 1
HLA-DOAP06340 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC21.32■■□□□ 1
HLA-DOAP06340 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.32■■□□□ 1
HLA-DOAP06340 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
HLA-DOAP06340 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.32■■□□□ 1
HLA-DOAP06340 PENK-208ENST00000523051 772 ntTSL 5 BASIC21.32■■□□□ 1
HLA-DOAP06340 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC21.32■■□□□ 1
HLA-DOAP06340 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.32■■□□□ 1
HLA-DOAP06340 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.32■■□□□ 1
HLA-DOAP06340 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
HLA-DOAP06340 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.31■■□□□ 1
HLA-DOAP06340 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 INTS4P1-201ENST00000438455 1935 ntBASIC21.31■■□□□ 1
HLA-DOAP06340 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
HLA-DOAP06340 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.31■■□□□ 1
HLA-DOAP06340 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.31■■□□□ 1
HLA-DOAP06340 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.31■■□□□ 1
HLA-DOAP06340 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.31■■□□□ 1
HLA-DOAP06340 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC21.31■■□□□ 1
HLA-DOAP06340 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC21.31■■□□□ 1
HLA-DOAP06340 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC21.31■■□□□ 1
HLA-DOAP06340 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
HLA-DOAP06340 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.31■■□□□ 1
HLA-DOAP06340 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.31■■□□□ 1
HLA-DOAP06340 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
HLA-DOAP06340 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
HLA-DOAP06340 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.31■■□□□ 1
HLA-DOAP06340 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
HLA-DOAP06340 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC21.3■■□□□ 1
HLA-DOAP06340 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
HLA-DOAP06340 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms