Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
GGPS1O95749 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
GGPS1O95749 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
GGPS1O95749 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
GGPS1O95749 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
GGPS1O95749 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.34■□□□□ 0.85
GGPS1O95749 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.34■□□□□ 0.85
GGPS1O95749 AL031598.1-201ENST00000561511 1773 ntBASIC20.34■□□□□ 0.85
GGPS1O95749 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
GGPS1O95749 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.34■□□□□ 0.85
GGPS1O95749 AF238378.1-201ENST00000526806 358 ntBASIC20.34■□□□□ 0.85
GGPS1O95749 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.34■□□□□ 0.85
GGPS1O95749 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.34■□□□□ 0.85
GGPS1O95749 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
GGPS1O95749 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.34■□□□□ 0.85
GGPS1O95749 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.34■□□□□ 0.85
GGPS1O95749 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
GGPS1O95749 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.34■□□□□ 0.85
GGPS1O95749 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
GGPS1O95749 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.33■□□□□ 0.85
GGPS1O95749 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
GGPS1O95749 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
GGPS1O95749 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
GGPS1O95749 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
GGPS1O95749 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
GGPS1O95749 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
GGPS1O95749 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
GGPS1O95749 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
GGPS1O95749 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
GGPS1O95749 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
GGPS1O95749 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.33■□□□□ 0.85
GGPS1O95749 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.33■□□□□ 0.85
GGPS1O95749 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.33■□□□□ 0.85
GGPS1O95749 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.33■□□□□ 0.85
GGPS1O95749 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.33■□□□□ 0.85
GGPS1O95749 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.33■□□□□ 0.85
GGPS1O95749 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
GGPS1O95749 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.33■□□□□ 0.85
GGPS1O95749 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.33■□□□□ 0.85
GGPS1O95749 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.33■□□□□ 0.84
GGPS1O95749 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.33■□□□□ 0.84
GGPS1O95749 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
GGPS1O95749 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
GGPS1O95749 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
GGPS1O95749 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
GGPS1O95749 CROCCP3-202ENST00000420820 1947 ntBASIC20.33■□□□□ 0.84
GGPS1O95749 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
GGPS1O95749 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
GGPS1O95749 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
GGPS1O95749 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.32■□□□□ 0.84
GGPS1O95749 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.32■□□□□ 0.84
GGPS1O95749 AC126763.1-201ENST00000552015 2118 ntBASIC20.32■□□□□ 0.84
GGPS1O95749 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
GGPS1O95749 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.32■□□□□ 0.84
GGPS1O95749 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
GGPS1O95749 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
GGPS1O95749 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.32■□□□□ 0.84
GGPS1O95749 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
GGPS1O95749 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
GGPS1O95749 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.32■□□□□ 0.84
GGPS1O95749 SLC25A6P4-201ENST00000586535 553 ntBASIC20.32■□□□□ 0.84
GGPS1O95749 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.32■□□□□ 0.84
GGPS1O95749 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.32■□□□□ 0.84
GGPS1O95749 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.32■□□□□ 0.84
GGPS1O95749 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
GGPS1O95749 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
GGPS1O95749 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.32■□□□□ 0.84
GGPS1O95749 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
GGPS1O95749 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
GGPS1O95749 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
GGPS1O95749 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
GGPS1O95749 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
GGPS1O95749 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
GGPS1O95749 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
GGPS1O95749 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.31■□□□□ 0.84
GGPS1O95749 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
GGPS1O95749 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
GGPS1O95749 RCN1P2-201ENST00000398357 915 ntBASIC20.31■□□□□ 0.84
GGPS1O95749 MRPL3P1-201ENST00000400109 1033 ntBASIC20.31■□□□□ 0.84
GGPS1O95749 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.31■□□□□ 0.84
GGPS1O95749 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
GGPS1O95749 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.31■□□□□ 0.84
GGPS1O95749 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.31■□□□□ 0.84
GGPS1O95749 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.31■□□□□ 0.84
GGPS1O95749 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.31■□□□□ 0.84
GGPS1O95749 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
GGPS1O95749 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms