Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CTDNEP1O95476 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
CTDNEP1O95476 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CTDNEP1O95476 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.04■□□□□ 0.96
CTDNEP1O95476 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CTDNEP1O95476 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTDNEP1O95476 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTDNEP1O95476 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CTDNEP1O95476 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTDNEP1O95476 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTDNEP1O95476 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTDNEP1O95476 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTDNEP1O95476 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 TSPY5P-201ENST00000426936 936 ntBASIC21.03■□□□□ 0.96
CTDNEP1O95476 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 AC113404.2-201ENST00000507884 177 ntBASIC21.03■□□□□ 0.96
CTDNEP1O95476 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 AC024563.2-201ENST00000603282 481 ntBASIC21.03■□□□□ 0.96
CTDNEP1O95476 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTDNEP1O95476 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.03■□□□□ 0.96
CTDNEP1O95476 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTDNEP1O95476 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTDNEP1O95476 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
CTDNEP1O95476 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CTDNEP1O95476 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.95
CTDNEP1O95476 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
CTDNEP1O95476 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.02■□□□□ 0.95
CTDNEP1O95476 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDNEP1O95476 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CTDNEP1O95476 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.01■□□□□ 0.95
CTDNEP1O95476 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CTDNEP1O95476 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CTDNEP1O95476 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.01■□□□□ 0.95
CTDNEP1O95476 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDNEP1O95476 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CTDNEP1O95476 RNF152P1-201ENST00000397754 604 ntBASIC21.01■□□□□ 0.95
CTDNEP1O95476 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.01■□□□□ 0.95
CTDNEP1O95476 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.01■□□□□ 0.95
CTDNEP1O95476 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDNEP1O95476 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC21.01■□□□□ 0.95
CTDNEP1O95476 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.01■□□□□ 0.95
CTDNEP1O95476 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDNEP1O95476 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.01■□□□□ 0.95
CTDNEP1O95476 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDNEP1O95476 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDNEP1O95476 KRT89P-201ENST00000620027 1478 ntBASIC21.01■□□□□ 0.95
CTDNEP1O95476 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CTDNEP1O95476 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTDNEP1O95476 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTDNEP1O95476 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21■□□□□ 0.95
CTDNEP1O95476 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CTDNEP1O95476 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTDNEP1O95476 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CTDNEP1O95476 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
CTDNEP1O95476 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21■□□□□ 0.95
CTDNEP1O95476 SPDYE13P-201ENST00000445314 798 ntBASIC21■□□□□ 0.95
CTDNEP1O95476 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CTDNEP1O95476 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21■□□□□ 0.95
CTDNEP1O95476 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTDNEP1O95476 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC21■□□□□ 0.95
CTDNEP1O95476 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21■□□□□ 0.95
CTDNEP1O95476 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CTDNEP1O95476 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21■□□□□ 0.95
CTDNEP1O95476 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms